Variant report

Variant	rs4712249
Chromosome Location	chr6:15087898-15087899
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:15085986..15094450-chr6:15243173..15249347,32	MCF-7	breast:
2	chr6:15087697..15090095-chr6:15243505..15246959,6	K562	blood:
3	chr6:15086720..15088244-chr6:15243922..15246794,2	MCF-7	breast:
4	chr6:15087697..15092455-chr6:15243972..15249952,11	K562	blood:
5	chr6:15086585..15088349-chr6:15089074..15091649,2	MCF-7	breast:
6	chr6:15086616..15088953-chr6:15137602..15139748,2	K562	blood:
7	chr6:15087836..15090279-chr6:15247303..15249952,4	K562	blood:
8	chr6:15086004..15088226-chr6:17393882..17396155,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000235488	Chromatin interaction
ENSG00000112186	Chromatin interaction
ENSG00000271888	Chromatin interaction
ENSG00000234261	Chromatin interaction
ENSG00000008083	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1114634	1.00[CEU][hapmap];0.88[CHB][hapmap];0.89[JPT][hapmap];0.87[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12175033	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.83[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12212803	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12215015	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1884120	1.00[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.95[YRI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2092732	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2092733	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2421481	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3800507	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3857639	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4715963	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4715966	0.84[ASN][1000 genomes]
rs6459394	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6459398	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6910972	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6919665	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6927040	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6937383	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6941421	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7747995	1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7755465	1.00[CEU][hapmap];0.85[GIH][hapmap];0.89[TSI][hapmap];0.85[EUR][1000 genomes]
rs9367862	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9370792	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9370793	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9383016	1.00[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap];0.81[YRI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9383018	0.85[AFR][1000 genomes]
rs9383019	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9396559	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9688891	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15077000-15090000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:15080000-15089400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:15083800-15088200	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr6:15083800-15093000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr6:15086400-15088200	Transcr. at gene 5' and 3'	K562	blood
6	chr6:15086600-15088000	Enhancers	Fetal Intestine Small	intestine
7	chr6:15086600-15088200	Enhancers	Duodenum Mucosa	Duodenum
8	chr6:15086800-15088200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr6:15087200-15091600	Enhancers	Placenta	Placenta
10	chr6:15087400-15090000	Weak transcription	Primary B cells from cord blood	blood
11	chr6:15087400-15117600	Weak transcription	Right Atrium	heart
12	chr6:15087600-15089000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr6:15087600-15090200	Weak transcription	Fetal Thymus	thymus
14	chr6:15087800-15089000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:15087800-15089000	Weak transcription	Fetal Kidney	kidney
16	chr6:15087800-15089400	Weak transcription	Stomach Mucosa	stomach
17	chr6:15087800-15090000	Weak transcription	Primary hematopoietic stem cells	blood
18	chr6:15087800-15090000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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