Variant report

Variant	rs9383016
Chromosome Location	chr6:15074186-15074187
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15062551..15066335-chr6:15072410..15076511,4	MCF-7	breast:
2	chr6:15072178..15075145-chr6:15244379..15247154,3	K562	blood:
3	chr6:15065231..15078374-chr6:15243362..15252213,26	MCF-7	breast:
4	chr6:15070915..15075463-chr6:15246209..15249841,5	MCF-7	breast:
5	chr6:15065449..15068780-chr6:15072645..15074662,4	K562	blood:
6	chr6:15070190..15074230-chr6:15074491..15076843,3	MCF-7	breast:
7	chr6:15069299..15075541-chr6:15075577..15080851,9	K562	blood:

Variant related genes	Relation type
ENSG00000271888	Chromatin interaction
ENSG00000235488	Chromatin interaction
ENSG00000008083	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1114634	1.00[CEU][hapmap];0.82[CHB][hapmap];0.83[JPT][hapmap];0.85[EUR][1000 genomes]
rs12175033	1.00[CEU][hapmap];0.81[YRI][hapmap]
rs12215015	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1884120	1.00[CEU][hapmap]
rs2092732	0.85[EUR][1000 genomes]
rs2092733	0.85[EUR][1000 genomes]
rs2421481	1.00[CEU][hapmap];0.83[JPT][hapmap]
rs3800507	1.00[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3857639	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4712249	1.00[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap];0.81[YRI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4715963	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6459394	0.81[EUR][1000 genomes]
rs6919665	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6937383	0.86[EUR][1000 genomes]
rs6941421	0.94[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7747995	1.00[CEU][hapmap];0.83[JPT][hapmap];0.84[EUR][1000 genomes]
rs7755465	1.00[CEU][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9370792	0.86[EUR][1000 genomes]
rs9370793	0.86[EUR][1000 genomes]
rs9383019	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9688891	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883454	chr6:15009137-15081252	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv3386877	chr6:15073957-15074339	Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15043800-15077400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:15058200-15074400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:15067200-15076600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr6:15067400-15076600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:15067600-15076200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:15068800-15077200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr6:15069200-15076400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:15072600-15075600	Weak transcription	K562	blood
9	chr6:15073000-15074400	Enhancers	GM12878-XiMat	blood
10	chr6:15073200-15074200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:15073200-15074400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:15073200-15075600	Enhancers	Brain Cingulate Gyrus	brain
13	chr6:15073400-15074200	Enhancers	Brain Substantia Nigra	brain
14	chr6:15073600-15074200	Enhancers	Brain Angular Gyrus	brain
15	chr6:15073600-15074200	Enhancers	Brain Hippocampus Middle	brain
16	chr6:15073600-15074200	Enhancers	HSMMtube	muscle
17	chr6:15073600-15074600	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr6:15073600-15074800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr6:15073600-15075400	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr6:15073600-15075400	Enhancers	Brain Anterior Caudate	brain
21	chr6:15073600-15076600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr6:15073800-15075000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr6:15073800-15079600	Weak transcription	Stomach Mucosa	stomach
24	chr6:15074000-15075200	Weak transcription	Placenta	Placenta
25	chr6:15074000-15076600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr6:15074000-15076800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr6:15074000-15077400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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