Variant report

Variant	rs7747995
Chromosome Location	chr6:15091074-15091075
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:8)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:8 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR2F2	chr6:15088795-15091133	K562	blood:	n/a	n/a
2	TEAD4	chr6:15088842-15091205	K562	blood:	n/a	n/a
3	POLR2A	chr6:15088927-15091074	K562	blood:	n/a	n/a
4	TBL1XR1	chr6:15088967-15091104	K562	blood:	n/a	n/a
5	POLR2A	chr6:15088866-15091960	PBDE	blood:	n/a	n/a
6	GATA1	chr6:15088922-15091150	PBDE	blood:	n/a	chr6:15090716-15090732 chr6:15090720-15090729 chr6:15089160-15089177
7	TCF12	chr6:15089437-15091074	MCF-7	breast:	n/a	n/a
8	PML	chr6:15088862-15091092	K562	blood:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:15089709..15092214-chr6:15313838..15315490,2	MCF-7	breast:
2	chr6:15085986..15094450-chr6:15243173..15249347,32	MCF-7	breast:
3	chr6:15091017..15092854-chr6:15217846..15219401,2	MCF-7	breast:
4	chr6:15088454..15091086-chr6:32937354..32938883,2	MCF-7	breast:
5	chr17:57919370..57922222-chr6:15090266..15091829,2	MCF-7	breast:
6	chr6:15087697..15092455-chr6:15243972..15249952,11	K562	blood:
7	chr6:15090854..15092609-chr6:15247191..15248815,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000234261	TF binding region
ENSG00000204256	Chromatin interaction
ENSG00000235488	Chromatin interaction
ENSG00000223837	Chromatin interaction
ENSG00000008083	Chromatin interaction
ENSG00000271888	Chromatin interaction
ENSG00000201367	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1114634	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12175033	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12212803	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12215015	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1884120	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2092732	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2092733	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2421481	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3800507	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3857639	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4712249	1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4715963	0.84[EUR][1000 genomes]
rs4715966	0.90[ASN][1000 genomes]
rs6459394	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6459398	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6910972	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6919665	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6927040	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6937383	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6941421	0.95[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7755465	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs9367862	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9370792	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9370793	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9383016	1.00[CEU][hapmap];0.83[JPT][hapmap];0.84[EUR][1000 genomes]
rs9383018	0.85[AFR][1000 genomes]
rs9383019	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9396559	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9688891	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15083800-15093000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr6:15087200-15091600	Enhancers	Placenta	Placenta
3	chr6:15087400-15117600	Weak transcription	Right Atrium	heart
4	chr6:15089000-15091800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:15089400-15091200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:15089400-15091400	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr6:15089600-15091800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:15089800-15091800	Flanking Active TSS	K562	blood
9	chr6:15090000-15091400	Enhancers	Primary B cells from cord blood	blood
10	chr6:15090000-15091400	Enhancers	Fetal Muscle Leg	muscle
11	chr6:15090200-15091200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr6:15090200-15091400	Enhancers	Fetal Thymus	thymus
13	chr6:15090200-15092800	Weak transcription	Esophagus	oesophagus
14	chr6:15090400-15092800	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr6:15090400-15094200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr6:15090400-15109000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:15090600-15091400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:15090800-15096800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:15091000-15091400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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