Variant report

Variant	rs4715963
Chromosome Location	chr6:15075857-15075858
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1114634	0.85[EUR][1000 genomes]
rs12215015	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2092732	0.84[EUR][1000 genomes]
rs2092733	0.84[EUR][1000 genomes]
rs3800507	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3857639	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4712249	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6459394	0.80[EUR][1000 genomes]
rs6919665	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6937383	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6941421	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7747995	0.84[EUR][1000 genomes]
rs7755465	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9370792	0.85[EUR][1000 genomes]
rs9370793	0.85[EUR][1000 genomes]
rs9383016	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9383019	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9688891	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883454	chr6:15009137-15081252	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15043800-15077400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:15067200-15076600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:15067400-15076600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:15067600-15076200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:15068800-15077200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr6:15069200-15076400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:15073600-15076600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:15073800-15079600	Weak transcription	Stomach Mucosa	stomach
9	chr6:15074000-15076600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:15074000-15076800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:15074000-15077400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:15074400-15076400	Weak transcription	GM12878-XiMat	blood
13	chr6:15074400-15076600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:15074600-15078000	Weak transcription	Thymus	Thymus
15	chr6:15074800-15080000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr6:15075200-15078000	Enhancers	Placenta	Placenta
17	chr6:15075400-15076600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr6:15075400-15078200	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr6:15075600-15076200	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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