Variant report

Variant	rs1884120
Chromosome Location	chr6:15107204-15107205
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:35)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:35 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr6:15106593-15107814	K562	blood:	n/a	n/a
2	CEBPB	chr6:15107164-15107551	K562	blood:	n/a	n/a
3	GATA1	chr6:15107181-15107625	PBDEFetal	blood:	n/a	chr6:15107298-15107307
4	CUX1	chr6:15107194-15107573	K562	blood:	n/a	n/a
5	EP300	chr6:15106637-15108016	K562	blood:	n/a	n/a
6	BHLHE40	chr6:15106719-15107788	K562	blood:	n/a	n/a
7	GATA2	chr6:15107196-15107645	K562	blood:	n/a	chr6:15107298-15107307
8	CEBPD	chr6:15107041-15107668	K562	blood:	n/a	n/a
9	TEAD4	chr6:15106558-15107947	K562	blood:	n/a	n/a
10	ZMIZ1	chr6:15107187-15107679	K562	blood:	n/a	n/a
11	NR2F2	chr6:15107061-15108277	K562	blood:	n/a	n/a
12	GATA2	chr6:15107072-15107683	K562	blood:	n/a	chr6:15107298-15107307
13	MAX	chr6:15107191-15107843	K562	blood:	n/a	n/a
14	POLR2A	chr6:15107131-15107265	MCF10A-Er-Src	breast:	n/a	n/a
15	STAT5A	chr6:15107100-15107548	K562	blood:	n/a	chr6:15107273-15107285
16	RCOR1	chr6:15107195-15107821	K562	blood:	n/a	n/a
17	SMC3	chr6:15107189-15107249	K562	blood:	n/a	n/a
18	TAL1	chr6:15106616-15107893	K562	blood:	n/a	chr6:15106807-15106825
19	CBX3	chr6:15106008-15107878	K562	blood:	n/a	n/a
20	POLR2A	chr6:15107180-15107524	K562	blood:	n/a	n/a
21	NR2F2	chr6:15107135-15107695	K562	blood:	n/a	n/a
22	TBL1XR1	chr6:15106863-15107648	K562	blood:	n/a	n/a
23	EP300	chr6:15107123-15107570	K562	blood:	n/a	n/a
24	TBL1XR1	chr6:15106764-15107582	K562	blood:	n/a	n/a
25	GATA1	chr6:15106470-15108923	K562	blood:	n/a	chr6:15108734-15108745 chr6:15106808-15106825 chr6:15107298-15107307
26	CEBPD	chr6:15106593-15107904	K562	blood:	n/a	n/a
27	POLR2A	chr6:15107145-15107728	K562	blood:	n/a	n/a
28	PML	chr6:15107074-15107682	K562	blood:	n/a	n/a
29	GATA2	chr6:15106745-15107756	K562	blood:	n/a	chr6:15106808-15106825 chr6:15107298-15107307
30	MYC	chr6:15106701-15107806	K562	blood:	n/a	n/a
31	TEAD4	chr6:15106597-15107576	K562	blood:	n/a	n/a
32	GATA1	chr6:15106602-15108186	PBDE	blood:	n/a	chr6:15106808-15106825 chr6:15107298-15107307
33	MAX	chr6:15106742-15107830	K562	blood:	n/a	n/a
34	STAT5A	chr6:15107085-15107559	K562	blood:	n/a	chr6:15107273-15107285
35	ARID3A	chr6:15106725-15107548	K562	blood:	n/a	n/a

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:15103632..15105300-chr6:15106507..15108224,2	K562	blood:
2	chr6:14882855..14884940-chr6:15106180..15108933,2	K562	blood:
3	chr6:14778863..14781243-chr6:15107030..15109161,2	K562	blood:
4	chr6:15106427..15109667-chr6:15111584..15114479,3	K562	blood:
5	chr6:15106242..15108900-chr6:15209959..15212920,4	K562	blood:
6	chr6:15069920..15071454-chr6:15106788..15108446,2	K562	blood:
7	chr6:15069954..15071516-chr6:15106946..15109346,2	K562	blood:
8	chr6:15092731..15095339-chr6:15106274..15108820,2	K562	blood:
9	chr6:15099407..15102397-chr6:15106486..15108344,2	K562	blood:
10	chr6:15102630..15105132-chr6:15106724..15108823,2	K562	blood:
11	chr6:15106983..15108831-chr6:15151531..15154353,2	K562	blood:
12	chr6:15105604..15108959-chr6:15245974..15248979,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000216754	TF binding region
ENSG00000242989	Chromatin interaction
ENSG00000216754	Chromatin interaction
ENSG00000235488	Chromatin interaction
ENSG00000008083	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1114634	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12175033	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12212803	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12215015	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13213110	0.82[ASN][1000 genomes]
rs2092732	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2092733	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2253602	0.84[JPT][hapmap]
rs2421481	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3800507	1.00[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3857639	0.80[EUR][1000 genomes]
rs4712249	1.00[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.95[YRI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4715966	0.92[ASN][1000 genomes]
rs6459394	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6459398	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6910972	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6919665	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6927040	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6937383	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6941421	0.95[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7747995	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7755465	1.00[CEU][hapmap]
rs9367862	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9370792	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9370793	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9383016	1.00[CEU][hapmap]
rs9383019	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9396559	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9476746	0.80[ASN][1000 genomes]
rs9688891	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016007	chr6:15099585-15159098	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2762580	chr6:15105917-15159110	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15087400-15117600	Weak transcription	Right Atrium	heart
2	chr6:15090400-15109000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:15106800-15108000	Flanking Active TSS	K562	blood
4	chr6:15107000-15107800	Enhancers	H1 Cell Line	embryonic stem cell

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