Variant report

Variant	rs9385026
Chromosome Location	chr6:118319006-118319007
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13198431	0.86[AMR][1000 genomes]
rs1338971	0.88[AMR][1000 genomes]
rs17079625	0.85[AMR][1000 genomes]
rs2211099	0.80[AMR][1000 genomes]
rs2355798	0.89[AMR][1000 genomes]
rs36172496	0.80[AMR][1000 genomes]
rs4120871	0.84[AMR][1000 genomes]
rs4245490	0.88[AMR][1000 genomes]
rs4434501	0.81[AMR][1000 genomes]
rs4945604	0.88[AMR][1000 genomes]
rs6914871	0.88[AMR][1000 genomes]
rs6928714	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9374698	0.85[AMR][1000 genomes]
rs9387532	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9401043	0.82[AMR][1000 genomes]
rs9401045	0.84[AMR][1000 genomes]
rs9766457	0.81[AMR][1000 genomes]
rs9968789	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv981179	chr6:118317043-118324199	Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118315400-118324400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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