Variant report
| Variant | rs2211099 |
|---|---|
| Chromosome Location | chr6:118316840-118316841 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs13198431 | 0.86[AMR][1000 genomes] |
| rs13211121 | 0.81[AMR][1000 genomes] |
| rs1338971 | 0.88[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs17079625 | 0.85[AMR][1000 genomes] |
| rs2355798 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs34358304 | 0.90[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs34729097 | 0.80[AMR][1000 genomes] |
| rs36172496 | 0.80[EUR][1000 genomes] |
| rs4113075 | 0.90[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs4120871 | 0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4245490 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs4434501 | 0.88[AMR][1000 genomes] |
| rs4945604 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs4946312 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6914871 | 0.88[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs6928714 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs7744988 | 0.90[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs9374693 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs9374698 | 0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs9385026 | 0.80[AMR][1000 genomes] |
| rs9387532 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs9401043 | 0.93[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs9401045 | 0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs9766457 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs9968789 | 0.86[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530526 | chr6:118027339-118718476 | Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:118315400-118324400 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
