Variant report

Variant	rs7744988
Chromosome Location	chr6:118311819-118311820
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs13198431	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13211121	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1338971	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17079625	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2211099	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2355798	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34358304	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34729097	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs36172496	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4113075	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4120871	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4245490	0.82[AMR][1000 genomes]
rs4434501	0.85[AMR][1000 genomes]
rs4945604	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4946312	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs5002415	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6914871	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6928714	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6935258	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9374693	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9374698	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9387532	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9401043	0.88[AMR][1000 genomes]
rs9401045	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9481751	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9489290	0.88[EUR][1000 genomes]
rs9766457	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9968789	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118305600-118315400	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr6:118308400-118314200	Weak transcription	Fetal Brain Female	brain
3	chr6:118309200-118315200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:118309800-118312200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:118309800-118312200	Enhancers	Brain Substantia Nigra	brain
6	chr6:118310000-118312000	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr6:118310000-118312800	Enhancers	Brain Cingulate Gyrus	brain
8	chr6:118310000-118315200	Enhancers	Brain Hippocampus Middle	brain
9	chr6:118310200-118312000	Enhancers	Brain Germinal Matrix	brain
10	chr6:118310600-118313600	Weak transcription	Brain Anterior Caudate	brain
11	chr6:118310800-118313600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:118311200-118312000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr6:118311400-118312000	Enhancers	Fetal Brain Male	brain
14	chr6:118311400-118315000	Enhancers	Brain Angular Gyrus	brain
15	chr6:118311600-118312400	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr6:118311600-118312800	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr6:118311800-118312600	Enhancers	HUES64 Cell Line	embryonic stem cell

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