Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs13198431	0.84[EUR][1000 genomes]
rs13211121	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17079625	0.95[CEU][hapmap];0.92[JPT][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap];0.84[EUR][1000 genomes]
rs17821501	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2355798	0.83[CEU][hapmap];0.92[JPT][hapmap]
rs34191954	0.86[ASN][1000 genomes]
rs34358304	0.84[EUR][1000 genomes]
rs34729097	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36172496	0.85[EUR][1000 genomes]
rs4113075	1.00[CEU][hapmap];0.80[CHB][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4120871	0.83[CEU][hapmap];0.85[JPT][hapmap]
rs4945604	0.87[CEU][hapmap];0.92[JPT][hapmap];0.81[MEX][hapmap]
rs4946312	0.87[CEU][hapmap];0.93[JPT][hapmap];0.86[MEX][hapmap];0.82[AMR][1000 genomes]
rs5002415	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56292955	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6914871	0.92[JPT][hapmap];0.81[MEX][hapmap]
rs6935258	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6935516	0.83[CEU][hapmap];0.92[JPT][hapmap]
rs7744988	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9374693	0.82[AMR][1000 genomes]
rs9387532	0.87[CEU][hapmap];0.92[JPT][hapmap];0.81[MEX][hapmap]
rs9489290	0.96[EUR][1000 genomes]
rs9766457	0.87[EUR][1000 genomes]
rs9968789	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118269800-118279200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr6:118273400-118282200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:118275800-118279200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:118276400-118279200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:118277800-118282600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr6:118278000-118279200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:118278000-118283400	Weak transcription	Brain Germinal Matrix	brain
8	chr6:118278200-118279200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:118278200-118281400	Weak transcription	Brain Substantia Nigra	brain
10	chr6:118278200-118282000	Weak transcription	Brain Angular Gyrus	brain
11	chr6:118278200-118283400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:118278400-118278800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:118278400-118282400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

Quick Search: