Variant report

Variant	rs17821501
Chromosome Location	chr6:118303607-118303608
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13211121	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34191954	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34729097	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs5002415	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56292955	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6935258	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9481751	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9489290	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118296400-118305800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:118297200-118305600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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