Variant report

Variant	rs9489290
Chromosome Location	chr6:118287693-118287694
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13198431	0.82[EUR][1000 genomes]
rs13211121	0.87[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs17079625	0.82[EUR][1000 genomes]
rs17821501	0.80[EUR][1000 genomes]
rs34358304	0.83[EUR][1000 genomes]
rs34729097	0.92[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs36172496	0.83[EUR][1000 genomes]
rs4113075	0.88[EUR][1000 genomes]
rs5002415	0.92[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs6935258	0.95[EUR][1000 genomes]
rs7744988	0.88[EUR][1000 genomes]
rs9481751	0.96[EUR][1000 genomes]
rs9766457	0.85[EUR][1000 genomes]
rs9968789	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118285000-118288000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
2	chr6:118285400-118288200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:118285600-118288200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:118286600-118301200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:118286800-118292600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:118287400-118288200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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