Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs13198431	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13211121	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1338971	0.81[AMR][1000 genomes]
rs17079625	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17821501	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2355798	0.82[AMR][1000 genomes]
rs34191954	0.89[ASN][1000 genomes]
rs34358304	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34729097	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36172496	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4113075	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4245490	0.81[AMR][1000 genomes]
rs4945604	0.85[AMR][1000 genomes]
rs4946312	0.85[AMR][1000 genomes]
rs5002415	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56292955	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6914871	0.81[AMR][1000 genomes]
rs7744988	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9374693	0.85[AMR][1000 genomes]
rs9387532	0.83[AMR][1000 genomes]
rs9481751	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9489290	0.95[EUR][1000 genomes]
rs9766457	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9968789	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118286600-118301200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:118286800-118292600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:118290800-118291800	Weak transcription	Fetal Brain Female	brain
4	chr6:118291400-118293800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
5	chr6:118291600-118292200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain

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