Variant report

Variant	rs56292955
Chromosome Location	chr6:118278856-118278857
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13211121	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17821501	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34191954	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34729097	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs5002415	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6935258	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9481751	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118269800-118279200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr6:118273400-118282200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:118275800-118279200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:118276400-118279200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:118277800-118282600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr6:118278000-118279200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:118278000-118283400	Weak transcription	Brain Germinal Matrix	brain
8	chr6:118278200-118279200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:118278200-118281400	Weak transcription	Brain Substantia Nigra	brain
10	chr6:118278200-118282000	Weak transcription	Brain Angular Gyrus	brain
11	chr6:118278200-118283400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:118278400-118282400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:118278800-118279000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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