Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs13198431	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13211121	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17079625	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17821501	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2211099	0.80[AMR][1000 genomes]
rs34191954	0.86[ASN][1000 genomes]
rs34358304	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs36172496	0.85[EUR][1000 genomes]
rs4113075	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4945604	0.81[AMR][1000 genomes]
rs4946312	0.85[AMR][1000 genomes]
rs5002415	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56292955	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6935258	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7744988	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9374693	0.85[AMR][1000 genomes]
rs9374698	0.80[AMR][1000 genomes]
rs9481751	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9489290	0.92[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs9766457	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9968789	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118284000-118286400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:118285000-118288000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
3	chr6:118285400-118286600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:118285400-118288200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:118285600-118286400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:118285600-118288200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:118285800-118286400	ZNF genes & repeats	Fetal Brain Female	brain

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