Variant report

Variant	rs4434501
Chromosome Location	chr6:118323556-118323557
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs13198431	0.83[AMR][1000 genomes]
rs1338971	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17079625	0.82[AMR][1000 genomes]
rs2211099	0.88[AMR][1000 genomes]
rs2355798	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34358304	0.87[AMR][1000 genomes]
rs4113075	0.85[AMR][1000 genomes]
rs4120871	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4245490	0.85[AMR][1000 genomes]
rs4945604	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4946312	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6914871	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6928714	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7744988	0.85[AMR][1000 genomes]
rs9374693	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9374698	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9385026	0.81[AMR][1000 genomes]
rs9387532	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9401043	0.90[AMR][1000 genomes]
rs9401045	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9968789	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv981179	chr6:118317043-118324199	Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118315400-118324400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:118323400-118332800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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