Variant report

Variant	rs9389688
Chromosome Location	chr6:139806836-139806837
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs4895561	0.87[CHB][hapmap];0.88[ASN][1000 genomes]
rs4895562	0.87[CHB][hapmap];0.88[ASN][1000 genomes]
rs4895563	0.82[JPT][hapmap]
rs4896462	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9399281	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9495497	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139802400-139807400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:139803800-139807400	Weak transcription	Ovary	ovary
3	chr6:139804000-139807000	Weak transcription	Fetal Kidney	kidney
4	chr6:139804000-139818200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:139804600-139810800	Weak transcription	K562	blood
6	chr6:139805200-139807400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr6:139806400-139807200	Enhancers	Liver	Liver
8	chr6:139806400-139807800	Enhancers	HepG2	liver
9	chr6:139806600-139807000	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr6:139806600-139807600	Enhancers	Colon Smooth Muscle	Colon
11	chr6:139806600-139807600	Enhancers	Fetal Heart	heart
12	chr6:139806600-139807600	Enhancers	Rectal Smooth Muscle	rectum
13	chr6:139806600-139807800	Enhancers	Fetal Stomach	stomach
14	chr6:139806800-139807200	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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