Variant report

Variant	rs9399281
Chromosome Location	chr6:139808819-139808820
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1468708	0.92[YRI][hapmap]
rs1468709	0.86[YRI][hapmap]
rs3010286	0.85[YRI][hapmap]
rs4895561	0.87[CHB][hapmap];0.88[ASN][1000 genomes]
rs4895562	0.87[CHB][hapmap];0.88[ASN][1000 genomes]
rs4895563	0.82[JPT][hapmap]
rs4896462	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9376420	0.93[YRI][hapmap]
rs9389688	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9399282	0.85[YRI][hapmap]
rs9403080	0.86[YRI][hapmap]
rs9495497	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139804000-139818200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:139804600-139810800	Weak transcription	K562	blood
3	chr6:139807000-139811200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:139807800-139809400	Weak transcription	HepG2	liver
5	chr6:139807800-139811000	Weak transcription	Pancreas	Pancrea
6	chr6:139807800-139811600	Weak transcription	Fetal Kidney	kidney
7	chr6:139808000-139810200	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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