Variant report

Variant	rs4895562
Chromosome Location	chr6:139808031-139808032
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs4895561	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896462	0.89[ASN][1000 genomes]
rs7744629	0.89[YRI][hapmap]
rs9389688	0.88[ASN][1000 genomes]
rs9399281	0.87[CHB][hapmap];0.88[ASN][1000 genomes]
rs9484277	0.88[YRI][hapmap]
rs9495497	0.91[CHB][hapmap];0.89[CHD][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4895562	HIVEP2	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139804000-139818200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:139804600-139810800	Weak transcription	K562	blood
3	chr6:139807000-139811200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:139807800-139808800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:139807800-139809400	Weak transcription	HepG2	liver
6	chr6:139807800-139811000	Weak transcription	Pancreas	Pancrea
7	chr6:139807800-139811600	Weak transcription	Fetal Kidney	kidney
8	chr6:139808000-139810200	Enhancers	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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