Variant report

Variant	rs7744629
Chromosome Location	chr6:139809868-139809869
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12333148	1.00[EUR][1000 genomes]
rs17068665	1.00[EUR][1000 genomes]
rs17068686	1.00[EUR][1000 genomes]
rs17068688	1.00[EUR][1000 genomes]
rs4895562	0.89[YRI][hapmap]
rs56656982	1.00[EUR][1000 genomes]
rs57265515	1.00[EUR][1000 genomes]
rs60832886	1.00[EUR][1000 genomes]
rs73551320	1.00[EUR][1000 genomes]
rs73775522	1.00[EUR][1000 genomes]
rs73775523	1.00[EUR][1000 genomes]
rs73775525	1.00[EUR][1000 genomes]
rs9484277	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9484278	1.00[EUR][1000 genomes]
rs9495436	1.00[EUR][1000 genomes]
rs9495438	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139804000-139818200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:139804600-139810800	Weak transcription	K562	blood
3	chr6:139807000-139811200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:139807800-139811000	Weak transcription	Pancreas	Pancrea
5	chr6:139807800-139811600	Weak transcription	Fetal Kidney	kidney
6	chr6:139808000-139810200	Enhancers	Liver	Liver
7	chr6:139809400-139810000	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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