Variant report

Variant	rs17068688
Chromosome Location	chr6:139773142-139773143
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:139693530..139699538-chr6:139762864..139774913,28	K562	blood:
2	chr6:139746639..139749113-chr6:139772562..139774559,2	K562	blood:
3	chr6:139770584..139773183-chr6:139828829..139830952,2	K562	blood:
4	chr6:139693217..139702760-chr6:139758637..139773636,35	K562	blood:
5	chr6:139766736..139768408-chr6:139772895..139775718,3	K562	blood:
6	chr6:139694047..139695995-chr6:139771490..139773794,2	MCF-7	breast:
7	chr6:139773028..139775843-chr6:139903683..139906144,2	K562	blood:
8	chr6:139771786..139774405-chr6:139971662..139973387,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12333148	1.00[EUR][1000 genomes]
rs17068665	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17068686	1.00[EUR][1000 genomes]
rs56656982	1.00[EUR][1000 genomes]
rs57265515	1.00[EUR][1000 genomes]
rs60832886	1.00[EUR][1000 genomes]
rs73551320	1.00[EUR][1000 genomes]
rs73775522	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73775523	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73775525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7744629	1.00[EUR][1000 genomes]
rs9484277	1.00[EUR][1000 genomes]
rs9484278	1.00[EUR][1000 genomes]
rs9495436	1.00[EUR][1000 genomes]
rs9495438	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518835	chr6:139770067-139800892	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139768200-139774000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:139769200-139773400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:139769400-139773200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:139769600-139773400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:139770600-139773400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:139770600-139773600	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr6:139771400-139773200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:139771400-139773200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr6:139771400-139773400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:139771400-139773400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr6:139771400-139773800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr6:139771600-139773400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:139771800-139773400	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr6:139771800-139773600	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr6:139771800-139774400	Weak transcription	Fetal Kidney	kidney
16	chr6:139772000-139773200	Weak transcription	K562	blood
17	chr6:139772000-139773400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr6:139772200-139773400	Weak transcription	Ovary	ovary
19	chr6:139772600-139773400	Enhancers	Fetal Heart	heart
20	chr6:139772800-139774000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:139773000-139773400	Weak transcription	HSMMtube	muscle
22	chr6:139773000-139774000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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