Variant report

Variant	rs9495436
Chromosome Location	chr6:139657098-139657099
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:139655853-139657281	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:139651501..139654108-chr6:139655331..139657320,2	K562	blood:

Variant related genes	Relation type
ENSG00000218565	TF binding region

rs_ID	r²[population]
rs12333148	1.00[EUR][1000 genomes]
rs17068665	1.00[EUR][1000 genomes]
rs17068686	1.00[EUR][1000 genomes]
rs17068688	1.00[EUR][1000 genomes]
rs56656982	1.00[EUR][1000 genomes]
rs57265515	1.00[EUR][1000 genomes]
rs60832886	1.00[EUR][1000 genomes]
rs73551320	1.00[EUR][1000 genomes]
rs73775522	1.00[EUR][1000 genomes]
rs73775523	1.00[EUR][1000 genomes]
rs73775525	1.00[EUR][1000 genomes]
rs7744629	1.00[EUR][1000 genomes]
rs9484277	1.00[EUR][1000 genomes]
rs9484278	1.00[EUR][1000 genomes]
rs9495438	1.00[EUR][1000 genomes]

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139648600-139657600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr6:139655200-139659200	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr6:139655400-139658000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:139655400-139660600	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr6:139655400-139662000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr6:139655600-139657200	Enhancers	HSMM	muscle
7	chr6:139655600-139659400	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr6:139656000-139660800	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr6:139656200-139657400	Flanking Active TSS	NHEK	skin
10	chr6:139656200-139658000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:139656200-139659200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:139656600-139657800	Weak transcription	Small Intestine	intestine
13	chr6:139656600-139658200	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr6:139656600-139659200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:139656600-139659200	Weak transcription	HSMMtube	muscle
16	chr6:139656600-139659400	Weak transcription	Adipose Nuclei	Adipose
17	chr6:139656600-139659400	Weak transcription	Fetal Muscle Leg	muscle
18	chr6:139656800-139657200	Enhancers	NHDF-Ad	bronchial
19	chr6:139656800-139657800	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr6:139656800-139657800	Weak transcription	NH-A	brain
21	chr6:139656800-139658400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:139656800-139658400	Enhancers	HMEC	breast
23	chr6:139656800-139659200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:139656800-139659200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr6:139656800-139660400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:139657000-139657200	Enhancers	Primary hematopoietic stem cells	blood
27	chr6:139657000-139657800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr6:139657000-139657800	Weak transcription	Psoas Muscle	Psoas
29	chr6:139657000-139658600	Enhancers	GM12878-XiMat	blood
30	chr6:139657000-139659000	Weak transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links