Variant report

Variant	rs9495438
Chromosome Location	chr6:139658804-139658805
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:139658598-139659468	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000218565	TF binding region

rs_ID	r²[population]
rs12333148	1.00[EUR][1000 genomes]
rs17068665	1.00[EUR][1000 genomes]
rs17068686	1.00[EUR][1000 genomes]
rs17068688	1.00[EUR][1000 genomes]
rs56656982	1.00[EUR][1000 genomes]
rs57265515	1.00[EUR][1000 genomes]
rs60832886	1.00[EUR][1000 genomes]
rs73551320	1.00[EUR][1000 genomes]
rs73775522	1.00[EUR][1000 genomes]
rs73775523	1.00[EUR][1000 genomes]
rs73775525	1.00[EUR][1000 genomes]
rs7744629	1.00[EUR][1000 genomes]
rs9484277	1.00[EUR][1000 genomes]
rs9484278	1.00[EUR][1000 genomes]
rs9495436	1.00[EUR][1000 genomes]

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139655200-139659200	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr6:139655400-139660600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr6:139655400-139662000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:139655600-139659400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr6:139656000-139660800	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr6:139656200-139659200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:139656600-139659200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:139656600-139659200	Weak transcription	HSMMtube	muscle
9	chr6:139656600-139659400	Weak transcription	Adipose Nuclei	Adipose
10	chr6:139656600-139659400	Weak transcription	Fetal Muscle Leg	muscle
11	chr6:139656800-139659200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:139656800-139659200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:139656800-139660400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:139657000-139659000	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr6:139657200-139659200	Weak transcription	Primary hematopoietic stem cells	blood
16	chr6:139657200-139659400	Weak transcription	HSMM	muscle
17	chr6:139657400-139659400	Enhancers	NHEK	skin
18	chr6:139657600-139660000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr6:139657600-139660400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr6:139657800-139659800	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr6:139658000-139659200	Weak transcription	Primary B cells from cord blood	blood
22	chr6:139658000-139659600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:139658000-139659800	Enhancers	Duodenum Mucosa	Duodenum
24	chr6:139658000-139660400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr6:139658000-139664600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:139658200-139659200	Weak transcription	Brain Hippocampus Middle	brain
27	chr6:139658400-139659000	Weak transcription	Psoas Muscle	Psoas
28	chr6:139658400-139659400	Weak transcription	Esophagus	oesophagus
29	chr6:139658400-139660400	Weak transcription	Small Intestine	intestine
30	chr6:139658400-139664200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr6:139658600-139659200	Weak transcription	Rectal Smooth Muscle	rectum
32	chr6:139658600-139664000	Weak transcription	GM12878-XiMat	blood
33	chr6:139658800-139660600	Enhancers	NHDF-Ad	bronchial
34	chr6:139658800-139660800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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