Variant report

Variant	rs9484277
Chromosome Location	chr6:139812226-139812227
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12333148	1.00[EUR][1000 genomes]
rs17068665	1.00[EUR][1000 genomes]
rs17068686	1.00[EUR][1000 genomes]
rs17068688	1.00[EUR][1000 genomes]
rs4895562	0.88[YRI][hapmap]
rs56656982	1.00[EUR][1000 genomes]
rs57265515	1.00[EUR][1000 genomes]
rs60832886	1.00[EUR][1000 genomes]
rs73551320	1.00[EUR][1000 genomes]
rs73775522	1.00[EUR][1000 genomes]
rs73775523	1.00[EUR][1000 genomes]
rs73775525	1.00[EUR][1000 genomes]
rs7744629	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9484278	1.00[EUR][1000 genomes]
rs9495436	1.00[EUR][1000 genomes]
rs9495438	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139804000-139818200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:139811200-139812400	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr6:139811400-139812400	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr6:139811600-139812600	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr6:139812000-139812600	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr6:139812000-139817600	Weak transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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