Variant report

Variant	rs9389711
Chromosome Location	chr6:140002180-140002181
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:139996960..139999233-chr6:140000474..140002828,2	K562	blood:
2	chr6:139691601..139696207-chr6:140002143..140005214,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10499211	0.86[CHB][hapmap];0.83[JPT][hapmap];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12663713	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17053880	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17069169	0.84[CHB][hapmap]
rs6905946	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap];0.93[YRI][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6906246	0.86[YRI][hapmap]
rs6937998	0.93[CHB][hapmap];0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs7743179	0.82[YRI][hapmap]
rs7753149	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7756228	0.80[YRI][hapmap]
rs7771420	0.85[ASN][1000 genomes]
rs9321747	0.86[CHB][hapmap];0.83[JPT][hapmap];0.93[YRI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9321748	0.93[CHB][hapmap];0.83[JPT][hapmap];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9321749	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[JPT][hapmap];0.93[YRI][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9321750	1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs9376444	1.00[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];0.93[YRI][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9376447	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9385871	0.93[CHB][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs9385872	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9385873	0.90[ASN][1000 genomes]
rs9389705	0.93[CHB][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs9389706	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap];0.93[YRI][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9389708	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9389709	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9389710	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9399289	0.84[CHB][hapmap]
rs9399290	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9403101	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap];0.93[YRI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9403102	0.92[CHB][hapmap]
rs9495560	0.83[YRI][hapmap]
rs9495561	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[JPT][hapmap];0.93[YRI][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9495562	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv516840	chr6:139960833-140053704	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140000600-140002400	Enhancers	Fetal Heart	heart
2	chr6:140001400-140007200	Weak transcription	Liver	Liver

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