Variant report

Variant	rs9495561
Chromosome Location	chr6:139985803-139985804
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:139694355..139696556-chr6:139984183..139986701,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10499211	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12663713	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17053880	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17069169	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs6905946	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906246	0.93[YRI][hapmap]
rs6937998	0.92[CHB][hapmap];0.85[ASN][1000 genomes]
rs7743179	0.83[LWK][hapmap];0.85[MKK][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes]
rs7753149	0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7756228	0.86[YRI][hapmap];0.84[AFR][1000 genomes]
rs7771420	0.90[ASN][1000 genomes]
rs9321747	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9321748	0.92[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321749	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321750	0.84[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs9376444	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9376447	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9385871	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9385872	0.92[ASN][1000 genomes]
rs9385873	0.92[ASN][1000 genomes]
rs9389705	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9389706	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9389708	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9389709	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9389710	0.92[ASN][1000 genomes]
rs9389711	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[JPT][hapmap];0.93[YRI][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9399289	1.00[CHB][hapmap];0.97[CHD][hapmap];0.85[GIH][hapmap];0.87[JPT][hapmap];0.92[ASN][1000 genomes]
rs9399290	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403101	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403102	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9495560	0.90[YRI][hapmap];0.84[AFR][1000 genomes]
rs9495562	0.90[YRI][hapmap];0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv516840	chr6:139960833-140053704	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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