Variant report

Variant	rs6906246
Chromosome Location	chr6:139988480-139988481
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs17053880	0.84[AFR][1000 genomes]
rs55689234	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55755046	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55961359	1.00[EUR][1000 genomes]
rs56245861	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56335309	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59731656	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61478054	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61657098	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61693276	0.80[EUR][1000 genomes]
rs6905946	0.93[YRI][hapmap];0.84[AFR][1000 genomes]
rs73556057	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7743179	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7754093	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7756228	1.00[CEU][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9321747	0.93[YRI][hapmap]
rs9321749	0.93[YRI][hapmap];0.84[AFR][1000 genomes]
rs9376444	0.93[YRI][hapmap];0.84[AFR][1000 genomes]
rs9389706	0.93[YRI][hapmap];0.84[AFR][1000 genomes]
rs9389711	0.86[YRI][hapmap]
rs9403101	0.93[YRI][hapmap];0.84[AFR][1000 genomes]
rs9495558	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9495560	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9495561	0.93[YRI][hapmap];0.84[AFR][1000 genomes]
rs9495562	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv516840	chr6:139960833-140053704	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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