Variant report

Variant	rs9389981
Chromosome Location	chr6:142594491-142594492
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:142588662..142590596-chr6:142592333..142594565,2	K562	blood:
2	chr6:142587570..142589234-chr6:142593481..142595662,2	MCF-7	breast:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs11757046	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11758623	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs11759498	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17789170	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs178783	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs225604	0.81[JPT][hapmap]
rs225605	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs225606	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs225618	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs225620	0.81[JPT][hapmap]
rs225622	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs225623	0.82[JPT][hapmap]
rs225624	0.81[JPT][hapmap]
rs225629	0.82[JPT][hapmap]
rs225630	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs225631	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs225632	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs225633	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs225634	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs225635	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs225639	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs225641	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs225642	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs225643	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs225652	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs225653	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs225654	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs225656	0.81[JPT][hapmap]
rs225657	0.81[JPT][hapmap]
rs225658	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs225659	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs225660	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs225662	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs225663	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs225665	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs225666	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs225671	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs225673	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs225674	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs225675	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs225676	0.90[CHB][hapmap]
rs225677	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs225678	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs225679	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs225684	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs225685	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs225687	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs225688	0.81[JPT][hapmap]
rs225689	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs225695	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs225700	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs225701	0.89[CHB][hapmap]
rs225702	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs225710	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs56061113	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62430517	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62430518	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62430519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs628311	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs639658	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs9321861	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9389979	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9389980	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9399397	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9403376	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5511	chr6:142550032-142594960	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv830825	chr6:142585242-142752575	Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1029666	chr6:142594099-142643084	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142590600-142597000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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