Variant report

Variant	rs9396058
Chromosome Location	chr6:55064343-55064344
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs9349763	0.94[ASN][1000 genomes]
rs9349764	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9370397	0.94[ASN][1000 genomes]
rs9370398	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016461	chr6:55038131-55129663	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55063200-55064400	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr6:55063600-55064400	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr6:55063600-55064400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr6:55063600-55064400	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr6:55063800-55064400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:55063800-55076600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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