Variant report

Variant	rs9400304
Chromosome Location	chr6:109918757-109918758
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10457201	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11153193	0.80[EUR][1000 genomes]
rs11153200	0.80[EUR][1000 genomes]
rs1115977	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12204769	0.82[EUR][1000 genomes]
rs12211805	0.81[EUR][1000 genomes]
rs12215867	0.80[EUR][1000 genomes]
rs12524352	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1321327	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1474959	0.82[EUR][1000 genomes]
rs1570012	0.81[EUR][1000 genomes]
rs1570013	0.81[EUR][1000 genomes]
rs1575109	0.81[EUR][1000 genomes]
rs1967725	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1969710	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1969711	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2357125	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4523125	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4591898	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs4946989	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4946991	0.82[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs4946992	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs67715693	0.80[EUR][1000 genomes]
rs7453835	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7454678	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7454858	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7749386	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7754118	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7754606	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9320304	0.82[EUR][1000 genomes]
rs9320305	0.82[EUR][1000 genomes]
rs9372216	0.81[AFR][1000 genomes]
rs9372221	0.81[EUR][1000 genomes]
rs9374097	0.80[AFR][1000 genomes]
rs9374108	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9384716	0.81[EUR][1000 genomes]
rs9386818	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9386820	0.81[EUR][1000 genomes]
rs9386823	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9386824	0.82[EUR][1000 genomes]
rs9386825	0.82[EUR][1000 genomes]
rs9386826	0.81[EUR][1000 genomes]
rs9398206	0.81[EUR][1000 genomes]
rs9400295	0.80[AFR][1000 genomes]
rs9400301	0.82[EUR][1000 genomes]
rs9480982	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9480984	0.80[EUR][1000 genomes]
rs9487153	0.81[AMR][1000 genomes]
rs9487156	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9487160	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9487164	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9487170	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9487171	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9487172	0.81[EUR][1000 genomes]
rs9487175	0.81[EUR][1000 genomes]
rs9487176	0.80[EUR][1000 genomes]
rs9986507	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026012	chr6:109851638-109999379	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv604484	chr6:109851937-109997529	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1019389	chr6:109868058-109987502	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538416	chr6:109868058-109987502	Genic enhancers ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv917318	chr6:109885195-109982375	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv949475	chr6:109907936-110160501	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9400304	C6orf199	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109917800-109924800	Weak transcription	Aorta	Aorta
2	chr6:109918000-109925200	Weak transcription	Thymus	Thymus

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