Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10434879	0.94[CEU][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.84[TSI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1891646	0.85[JPT][hapmap]
rs2202065	0.94[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap]
rs4412234	0.85[JPT][hapmap]
rs4461766	0.85[JPT][hapmap]
rs4946565	0.90[JPT][hapmap]
rs6926502	0.85[JPT][hapmap]
rs6941235	0.81[JPT][hapmap]
rs7450632	0.84[JPT][hapmap]
rs7768058	0.85[JPT][hapmap]
rs9320801	0.81[JPT][hapmap]
rs9320803	0.82[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap]
rs9320806	0.85[JPT][hapmap]
rs9320807	0.90[JPT][hapmap]
rs9320808	0.90[JPT][hapmap]
rs9320809	0.81[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap]
rs9375022	0.85[JPT][hapmap]
rs9387924	0.81[JPT][hapmap]
rs9387929	0.85[JPT][hapmap]
rs9387942	0.85[JPT][hapmap]
rs9398629	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9398632	0.82[CEU][hapmap]
rs9401384	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9482118	0.81[JPT][hapmap]
rs9482119	0.85[JPT][hapmap]
rs9490138	0.83[CHB][hapmap];0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv830789	chr6:121581450-121732320	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv970057	chr6:121663325-121679145	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9401395	C6orf170	cis	brain	BrainEAC

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121669200-121670400	Weak transcription	Fetal Intestine Small	intestine

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