Variant report

Variant	rs9401960
Chromosome Location	chr6:127737284-127737285
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs4285343	0.95[AMR][1000 genomes]
rs4308584	0.88[AMR][1000 genomes]
rs4487601	0.89[AMR][1000 genomes]
rs4555941	0.94[AMR][1000 genomes]
rs4897214	0.89[AMR][1000 genomes]
rs6569488	0.89[AMR][1000 genomes]
rs6912006	0.89[AMR][1000 genomes]
rs6912196	0.89[AMR][1000 genomes]
rs6912552	0.89[AMR][1000 genomes]
rs6912750	0.89[AMR][1000 genomes]
rs6914131	0.95[AMR][1000 genomes]
rs6919082	0.95[AMR][1000 genomes]
rs6919277	0.95[AMR][1000 genomes]
rs6924274	0.89[AMR][1000 genomes]
rs6934242	0.95[AMR][1000 genomes]
rs6940199	0.88[AMR][1000 genomes]
rs7762624	0.90[AMR][1000 genomes]
rs7768435	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs7769165	0.95[AMR][1000 genomes]
rs9321081	0.88[AMR][1000 genomes]
rs9321082	0.83[AMR][1000 genomes]
rs9321083	0.84[AMR][1000 genomes]
rs9321084	0.81[AMR][1000 genomes]
rs9321085	0.93[AMR][1000 genomes]
rs9375508	0.80[AMR][1000 genomes]
rs9385422	0.90[AMR][1000 genomes]
rs9385424	0.89[AMR][1000 genomes]
rs9401958	0.95[AMR][1000 genomes]
rs9401959	0.95[AMR][1000 genomes]
rs9491781	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430461	chr6:127727308-127754317	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9401960	ECHDC1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:127734800-127737800	Weak transcription	K562	blood
2	chr6:127734800-127741800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:127735400-127741200	Weak transcription	HSMMtube	muscle
4	chr6:127736800-127741000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:127736800-127741200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:127737000-127737800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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