Variant report

Variant	rs4897214
Chromosome Location	chr6:127723625-127723626
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:127660533..127662704-chr6:127721402..127724241,2	K562	blood:

Extended variants
information (count: 71 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs13218061	0.84[CHB][hapmap]
rs1543432	0.83[AFR][1000 genomes]
rs2144742	0.84[CHB][hapmap]
rs2144743	0.82[CHB][hapmap]
rs2180341	0.83[CHB][hapmap];0.84[YRI][hapmap]
rs2326567	0.83[CHB][hapmap];0.84[YRI][hapmap]
rs3798852	0.84[CHB][hapmap]
rs3798853	0.83[CHB][hapmap];0.84[YRI][hapmap]
rs3798857	0.84[CHB][hapmap]
rs4285343	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4308584	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4448121	0.83[AFR][1000 genomes]
rs4486042	0.83[AFR][1000 genomes]
rs4487601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4555941	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4897207	0.82[CHB][hapmap];0.84[YRI][hapmap]
rs6569479	0.83[CHB][hapmap];0.84[YRI][hapmap]
rs6569486	0.83[AFR][1000 genomes]
rs6569487	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6569488	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6912006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6912196	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6912552	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6912750	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6913424	0.83[AFR][1000 genomes]
rs6914131	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6916990	0.83[AFR][1000 genomes]
rs6919082	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6919277	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6924274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6934242	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6937287	0.83[CHB][hapmap]
rs6940199	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7453272	0.83[CHB][hapmap]
rs7745944	0.83[AFR][1000 genomes]
rs7751865	0.82[CEU][hapmap];0.84[CHB][hapmap]
rs7753913	0.83[AFR][1000 genomes]
rs7756336	0.84[CHB][hapmap]
rs7756880	0.83[CHB][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes]
rs7756884	0.83[CHB][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes]
rs7760748	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs7762624	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7768435	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7769165	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7773484	0.83[AFR][1000 genomes]
rs7776136	0.83[CHB][hapmap];0.84[YRI][hapmap]
rs9321076	0.84[CHB][hapmap]
rs9321079	0.83[AFR][1000 genomes]
rs9321081	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9321082	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9321083	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9321084	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9321085	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9375492	0.83[CHB][hapmap]
rs9375503	0.83[AFR][1000 genomes]
rs9375508	0.88[AMR][1000 genomes]
rs9385422	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9385424	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9388568	0.84[CHB][hapmap]
rs9398838	0.83[CHB][hapmap]
rs9398839	0.83[AFR][1000 genomes]
rs9398840	0.83[CHB][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes]
rs9398842	0.84[CHB][hapmap]
rs9401950	0.84[CHB][hapmap]
rs9401951	0.83[AFR][1000 genomes]
rs9401953	0.83[CHB][hapmap]
rs9401958	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9401959	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9401960	0.89[AMR][1000 genomes]
rs9491775	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9491781	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4897214	ECHDC1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:127719200-127724200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:127719400-127724400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:127719400-127724600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:127719600-127724000	Weak transcription	HMEC	breast
5	chr6:127719600-127724200	Weak transcription	Adipose Nuclei	Adipose
6	chr6:127719600-127724600	Weak transcription	Osteobl	bone
7	chr6:127719800-127724200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:127719800-127724400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:127720000-127724400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:127720200-127725200	Weak transcription	Psoas Muscle	Psoas
11	chr6:127720400-127729200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:127721400-127726200	Weak transcription	K562	blood
13	chr6:127721400-127726800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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