Variant report

Variant	rs6569487
Chromosome Location	chr6:127726196-127726197
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs11154402	0.82[EUR][1000 genomes]
rs11556354	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs12175928	0.82[JPT][hapmap]
rs12189967	0.82[EUR][1000 genomes]
rs12190164	0.82[EUR][1000 genomes]
rs2073298	0.82[JPT][hapmap]
rs2180341	0.86[MEX][hapmap]
rs2326567	0.86[MEX][hapmap]
rs3798853	0.86[MEX][hapmap]
rs4141423	0.82[JPT][hapmap]
rs4285343	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4308584	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4371861	0.85[EUR][1000 genomes]
rs4392733	0.82[EUR][1000 genomes]
rs4487601	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4555941	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4577822	0.82[EUR][1000 genomes]
rs4897207	0.82[MEX][hapmap]
rs4897214	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6569479	0.86[MEX][hapmap]
rs6569485	0.82[JPT][hapmap]
rs6569488	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6912006	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6912196	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6912552	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6912750	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6914131	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6919082	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6919277	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6924274	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6934242	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6940199	0.81[EUR][1000 genomes]
rs761842	0.82[JPT][hapmap]
rs7751865	0.89[YRI][hapmap]
rs7762624	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7764180	0.82[JPT][hapmap]
rs7768435	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7769165	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs877102	0.82[ASW][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap];0.82[MEX][hapmap];0.90[YRI][hapmap]
rs9321072	0.82[JPT][hapmap]
rs9321081	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9321082	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9321083	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9321085	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9372861	0.86[JPT][hapmap]
rs9372862	0.82[JPT][hapmap]
rs9372863	0.81[JPT][hapmap]
rs9372865	0.82[JPT][hapmap]
rs9372866	0.86[JPT][hapmap]
rs9375498	0.86[JPT][hapmap]
rs9375500	0.81[JPT][hapmap]
rs9375502	0.82[JPT][hapmap]
rs9385422	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9385424	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9388558	0.82[JPT][hapmap]
rs9388559	0.82[JPT][hapmap]
rs9398840	0.86[MEX][hapmap]
rs9401945	0.82[JPT][hapmap]
rs9401947	0.82[CHD][hapmap];0.86[JPT][hapmap]
rs9401949	0.82[JPT][hapmap]
rs9401953	0.86[MEX][hapmap]
rs9401958	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9401959	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9491781	0.88[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6569487	ECHDC1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:127720400-127729200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:127721400-127726200	Weak transcription	K562	blood
3	chr6:127721400-127726800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:127724200-127726200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:127724200-127726600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:127724200-127726800	Enhancers	Adipose Nuclei	Adipose
7	chr6:127724400-127726200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:127724400-127726200	Enhancers	NHDF-Ad	bronchial
9	chr6:127724400-127727000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:127724600-127726600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:127725000-127726200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:127725800-127726200	Enhancers	Psoas Muscle	Psoas
13	chr6:127726000-127726400	Enhancers	Muscle Satellite Cultured Cells	--
14	chr6:127726000-127726400	Enhancers	GM12878-XiMat	blood
15	chr6:127726000-127726400	Enhancers	NHEK	skin
16	chr6:127726000-127726600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:127726000-127726800	Enhancers	HMEC	breast

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