Variant report

Variant	rs9385424
Chromosome Location	chr6:127726796-127726797
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs11556354	0.82[TSI][hapmap]
rs13218061	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs1543432	0.81[AFR][1000 genomes]
rs2144742	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs2144743	0.83[CHB][hapmap]
rs2180341	0.84[CHB][hapmap];0.81[JPT][hapmap];0.83[LWK][hapmap];0.86[MEX][hapmap]
rs2326567	0.84[CHB][hapmap];0.81[JPT][hapmap];0.83[LWK][hapmap];0.86[MEX][hapmap]
rs3798852	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs3798853	0.84[CHB][hapmap];0.81[JPT][hapmap];0.81[LWK][hapmap];0.86[MEX][hapmap]
rs3798857	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs4285343	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4308584	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4448121	0.81[AFR][1000 genomes]
rs4486042	0.81[AFR][1000 genomes]
rs4487601	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4555941	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4897207	0.81[JPT][hapmap];0.82[LWK][hapmap];0.82[MEX][hapmap]
rs4897214	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6569479	0.84[CHB][hapmap];0.81[JPT][hapmap];0.83[LWK][hapmap];0.86[MEX][hapmap]
rs6569486	0.81[AFR][1000 genomes]
rs6569487	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6569488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6912006	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6912196	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6912552	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6912750	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6913424	0.81[AFR][1000 genomes]
rs6914131	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6916990	0.81[AFR][1000 genomes]
rs6919082	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6919277	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6924274	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6934242	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6937287	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs6940199	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7453272	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs7745944	0.81[AFR][1000 genomes]
rs7751865	0.81[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap]
rs7753913	0.81[AFR][1000 genomes]
rs7756336	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs7756880	0.83[CHB][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes]
rs7756884	0.83[CHB][hapmap];0.81[JPT][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes]
rs7760748	0.83[CHB][hapmap];0.85[JPT][hapmap]
rs7762624	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7768435	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7769165	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7773484	0.81[AFR][1000 genomes]
rs7776136	0.84[CHB][hapmap];0.81[JPT][hapmap];0.83[LWK][hapmap]
rs877102	0.82[MEX][hapmap]
rs9321076	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs9321079	0.81[AFR][1000 genomes]
rs9321081	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9321082	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9321083	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9321084	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9321085	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9375492	0.84[CHB][hapmap]
rs9375503	0.81[AFR][1000 genomes]
rs9375508	0.88[AMR][1000 genomes]
rs9385422	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9388568	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs9398838	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs9398839	0.81[AFR][1000 genomes]
rs9398840	0.85[ASW][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap];0.86[LWK][hapmap];0.86[MEX][hapmap];0.80[MKK][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes]
rs9398842	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs9401950	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs9401951	0.81[AFR][1000 genomes]
rs9401953	0.84[CHB][hapmap];0.81[JPT][hapmap];0.86[MEX][hapmap]
rs9401958	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9401959	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9401960	0.89[AMR][1000 genomes]
rs9491775	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9491781	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9385424	ECHDC1	Cis_1M	lymphoblastoid	RTeQTL
rs9385424	EPB41L2	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:127720400-127729200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:127721400-127726800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:127724200-127726800	Enhancers	Adipose Nuclei	Adipose
4	chr6:127724400-127727000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:127726000-127726800	Enhancers	HMEC	breast
6	chr6:127726200-127726800	Enhancers	K562	blood

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