Variant report

Variant	rs9403601
Chromosome Location	chr6:145090104-145090105
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11155374	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12661505	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12663956	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12665635	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4499950	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs9321995	0.85[JPT][hapmap]
rs9373426	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9376847	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9376848	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9376849	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9376856	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9376861	0.86[JPT][hapmap]
rs9386083	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9390209	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9390214	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9390216	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9390225	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9390227	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9390237	0.86[JPT][hapmap]
rs9399496	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9399497	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9399498	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9399500	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs9403597	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9403598	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9403599	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9403600	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9403607	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9403612	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1032838	chr6:144978504-145110121	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830833	chr6:145001310-145201143	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv1021098	chr6:145017386-145106441	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145011800-145090200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr6:145011800-145096600	Weak transcription	Thymus	Thymus
3	chr6:145040000-145094600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:145040000-145114600	Weak transcription	NHLF	lung
5	chr6:145046000-145122200	Weak transcription	Colonic Mucosa	Colon
6	chr6:145047600-145096600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:145047600-145115000	Weak transcription	Esophagus	oesophagus
8	chr6:145047600-145115000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr6:145049400-145098400	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr6:145054000-145095600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr6:145054200-145093400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr6:145054400-145100000	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr6:145059600-145096600	Weak transcription	Lung	lung
14	chr6:145059600-145097400	Weak transcription	Spleen	Spleen
15	chr6:145059800-145096600	Weak transcription	Fetal Stomach	stomach
16	chr6:145066200-145090200	Weak transcription	Fetal Kidney	kidney
17	chr6:145066200-145126200	Weak transcription	Stomach Mucosa	stomach
18	chr6:145066400-145090400	Weak transcription	Pancreas	Pancrea
19	chr6:145066400-145090600	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr6:145067800-145115800	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr6:145068800-145090600	Weak transcription	Small Intestine	intestine
22	chr6:145068800-145115000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:145069600-145093400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr6:145069800-145094200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr6:145069800-145101800	Weak transcription	Aorta	Aorta
26	chr6:145070000-145090600	Weak transcription	Left Ventricle	heart
27	chr6:145070000-145092600	Weak transcription	Fetal Intestine Small	intestine
28	chr6:145070200-145094000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr6:145070600-145094400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr6:145072200-145101800	Weak transcription	Fetal Intestine Large	intestine
31	chr6:145072600-145094800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr6:145072800-145093600	Weak transcription	Placenta	Placenta
33	chr6:145073200-145105400	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr6:145073400-145090200	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr6:145074400-145094000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr6:145074600-145094400	Weak transcription	Osteobl	bone
37	chr6:145075000-145108800	Strong transcription	Primary B cells from cord blood	blood
38	chr6:145075600-145094400	Weak transcription	GM12878-XiMat	blood
39	chr6:145076800-145095000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr6:145078000-145093400	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr6:145080000-145115000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr6:145080200-145094200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr6:145080200-145094400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr6:145080200-145094600	Weak transcription	HUVEC	blood vessel
45	chr6:145084000-145090600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr6:145084000-145094200	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr6:145084000-145094400	Weak transcription	Fetal Muscle Trunk	muscle
48	chr6:145084000-145155800	Weak transcription	Right Ventricle	heart
49	chr6:145084200-145101000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr6:145084400-145090400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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