Variant report

Variant	rs9403607
Chromosome Location	chr6:145098119-145098120
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11155374	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12661505	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12663956	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12665635	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4143940	0.98[ASN][1000 genomes]
rs4143941	1.00[ASN][1000 genomes]
rs4499950	0.85[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9321995	0.84[JPT][hapmap]
rs9373426	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9376847	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9376848	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9376849	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9376850	0.96[ASN][1000 genomes]
rs9376851	0.96[ASN][1000 genomes]
rs9376856	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9376861	0.86[JPT][hapmap]
rs9386083	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9390204	1.00[ASN][1000 genomes]
rs9390207	1.00[ASN][1000 genomes]
rs9390209	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9390210	1.00[ASN][1000 genomes]
rs9390213	0.96[ASN][1000 genomes]
rs9390214	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9390216	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9390225	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9390227	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9390237	0.86[JPT][hapmap]
rs9399496	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9399497	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9399498	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9399499	1.00[ASN][1000 genomes]
rs9399500	0.85[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9403597	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9403598	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9403599	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9403600	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9403601	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9403612	0.86[JPT][hapmap]
rs9403613	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1032838	chr6:144978504-145110121	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830833	chr6:145001310-145201143	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv1021098	chr6:145017386-145106441	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145040000-145114600	Weak transcription	NHLF	lung
2	chr6:145046000-145122200	Weak transcription	Colonic Mucosa	Colon
3	chr6:145047600-145115000	Weak transcription	Esophagus	oesophagus
4	chr6:145047600-145115000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr6:145049400-145098400	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr6:145054400-145100000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr6:145066200-145126200	Weak transcription	Stomach Mucosa	stomach
8	chr6:145067800-145115800	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr6:145068800-145115000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:145069800-145101800	Weak transcription	Aorta	Aorta
11	chr6:145072200-145101800	Weak transcription	Fetal Intestine Large	intestine
12	chr6:145073200-145105400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr6:145075000-145108800	Strong transcription	Primary B cells from cord blood	blood
14	chr6:145080000-145115000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:145084000-145155800	Weak transcription	Right Ventricle	heart
16	chr6:145084200-145101000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:145085400-145119000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:145085800-145134800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:145086800-145115000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:145087400-145115000	Weak transcription	Gastric	stomach
21	chr6:145088000-145102000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr6:145089600-145138400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr6:145090000-145136800	Weak transcription	Fetal Heart	heart
24	chr6:145090400-145115000	Weak transcription	Brain Anterior Caudate	brain
25	chr6:145090800-145100000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr6:145090800-145100000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr6:145090800-145115400	Weak transcription	Fetal Brain Male	brain
28	chr6:145091000-145098800	Weak transcription	Small Intestine	intestine
29	chr6:145091000-145100000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr6:145091000-145105200	Weak transcription	HSMM	muscle
31	chr6:145091000-145107800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr6:145091000-145107800	Weak transcription	Ovary	ovary
33	chr6:145091000-145114400	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr6:145091000-145114400	Weak transcription	NHDF-Ad	bronchial
35	chr6:145091000-145115000	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr6:145091000-145115000	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr6:145091000-145145000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr6:145091200-145117200	Weak transcription	Psoas Muscle	Psoas
39	chr6:145092000-145098200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr6:145093200-145098200	Strong transcription	Primary T helper cells fromperipheralblood	blood
41	chr6:145093200-145098200	Strong transcription	Adipose Nuclei	Adipose
42	chr6:145093200-145098400	Strong transcription	Fetal Thymus	thymus
43	chr6:145093400-145098200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr6:145093400-145098200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr6:145093400-145098400	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr6:145093400-145098400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr6:145093400-145103400	Strong transcription	Primary B cells from peripheral blood	blood
48	chr6:145093400-145119800	Weak transcription	Fetal Intestine Small	intestine
49	chr6:145093800-145114800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr6:145094000-145098200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood

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