Variant report

Variant	rs9403612
Chromosome Location	chr6:145128128-145128129
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11155374	0.86[JPT][hapmap]
rs12661505	0.86[JPT][hapmap]
rs12663956	0.89[JPT][hapmap]
rs12665635	0.89[JPT][hapmap]
rs4499950	0.86[JPT][hapmap]
rs7738329	0.85[AMR][1000 genomes]
rs9321995	1.00[JPT][hapmap]
rs9373426	0.89[JPT][hapmap]
rs9376847	0.86[JPT][hapmap]
rs9376848	0.88[JPT][hapmap]
rs9376849	0.89[JPT][hapmap]
rs9376856	0.88[JPT][hapmap]
rs9376861	1.00[JPT][hapmap]
rs9386083	0.89[JPT][hapmap]
rs9390209	0.89[JPT][hapmap]
rs9390214	0.88[JPT][hapmap]
rs9390216	0.88[JPT][hapmap]
rs9390225	0.88[JPT][hapmap]
rs9390227	0.89[JPT][hapmap]
rs9390237	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs9399496	0.89[JPT][hapmap]
rs9399497	0.86[JPT][hapmap]
rs9399498	0.89[JPT][hapmap]
rs9399500	0.89[JPT][hapmap]
rs9403597	0.88[JPT][hapmap]
rs9403598	0.89[JPT][hapmap]
rs9403599	0.88[JPT][hapmap]
rs9403600	0.89[JPT][hapmap]
rs9403601	0.88[JPT][hapmap]
rs9403607	0.86[JPT][hapmap]
rs9484902	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv830833	chr6:145001310-145201143	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv886740	chr6:145105354-145199259	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv886741	chr6:145123326-145165362	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv7877	chr6:145127459-145128278	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases
6	esv3473523	chr6:145127618-145128155	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145084000-145155800	Weak transcription	Right Ventricle	heart
2	chr6:145085800-145134800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:145089600-145138400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr6:145090000-145136800	Weak transcription	Fetal Heart	heart
5	chr6:145091000-145145000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:145094400-145136800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr6:145099600-145165800	Weak transcription	Small Intestine	intestine
8	chr6:145100000-145137600	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr6:145100400-145133200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr6:145100400-145145000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr6:145110400-145137000	Strong transcription	Primary B cells from cord blood	blood
12	chr6:145114200-145135600	Strong transcription	Primary B cells from peripheral blood	blood
13	chr6:145115200-145155000	Weak transcription	Esophagus	oesophagus
14	chr6:145115600-145131400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:145115600-145134800	Weak transcription	Lung	lung
16	chr6:145115800-145156600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr6:145116000-145142000	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr6:145116000-145148600	Weak transcription	Placenta	Placenta
19	chr6:145116000-145154800	Weak transcription	Spleen	Spleen
20	chr6:145116000-145155800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr6:145116200-145154400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr6:145116400-145155600	Weak transcription	Stomach Smooth Muscle	stomach
23	chr6:145116400-145169000	Weak transcription	Rectal Smooth Muscle	rectum
24	chr6:145117200-145128800	Strong transcription	Primary hematopoietic stem cells	blood
25	chr6:145117200-145137400	Strong transcription	Dnd41	blood
26	chr6:145117400-145175200	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr6:145117600-145148400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr6:145118200-145137000	Weak transcription	Psoas Muscle	Psoas
29	chr6:145119200-145134800	Weak transcription	GM12878-XiMat	blood
30	chr6:145119200-145155800	Weak transcription	Pancreas	Pancrea
31	chr6:145119600-145128200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr6:145119600-145129000	Weak transcription	Colon Smooth Muscle	Colon
33	chr6:145119600-145139600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr6:145119800-145131200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr6:145119800-145133000	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr6:145120000-145129600	Weak transcription	Osteobl	bone
37	chr6:145120000-145141600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr6:145120000-145145800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr6:145120000-145148800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr6:145120000-145155000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr6:145120200-145130000	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr6:145120200-145132400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr6:145120200-145134600	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr6:145120200-145134800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr6:145120200-145135200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr6:145120200-145145800	Weak transcription	Fetal Intestine Small	intestine
47	chr6:145120200-145145800	Weak transcription	Fetal Stomach	stomach
48	chr6:145120200-145148400	Weak transcription	Ovary	ovary
49	chr6:145120200-145156400	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr6:145120400-145131400	Weak transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links