Variant report

Variant	rs9409470
Chromosome Location	chr9:95100599-95100600
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95084458..95089209-chr9:95098381..95101726,4	K562	blood:
2	chr9:95097918..95099765-chr9:95100286..95102734,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000188312	Chromatin interaction
ENSG00000198000	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1144933	0.81[ASN][1000 genomes]
rs1152760	0.81[ASN][1000 genomes]
rs1152761	0.81[ASN][1000 genomes]
rs1152762	0.81[ASN][1000 genomes]
rs1175737	0.81[ASN][1000 genomes]
rs4743867	0.81[ASN][1000 genomes]
rs4743871	0.85[ASN][1000 genomes]
rs501814	0.81[ASN][1000 genomes]
rs9409464	0.81[ASN][1000 genomes]
rs9409469	0.85[ASN][1000 genomes]
rs9409665	0.85[ASN][1000 genomes]
rs9409666	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv1046733	chr9:94690622-95138564	Genic enhancers Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv1045165	chr9:95057462-95138564	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95088600-95101000	Weak transcription	Aorta	Aorta
2	chr9:95088600-95103600	Weak transcription	Esophagus	oesophagus
3	chr9:95088600-95104000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr9:95088600-95108600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:95088800-95102000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:95088800-95102600	Weak transcription	Small Intestine	intestine
7	chr9:95088800-95103600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr9:95088800-95103800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr9:95088800-95103800	Weak transcription	Pancreas	Pancrea
10	chr9:95088800-95104000	Weak transcription	Left Ventricle	heart
11	chr9:95088800-95111200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr9:95088800-95111600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr9:95089000-95101000	Weak transcription	Brain Substantia Nigra	brain
14	chr9:95089000-95101200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr9:95089000-95101400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr9:95089000-95102000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr9:95089000-95102600	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr9:95089000-95103200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr9:95089000-95103600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr9:95089000-95104000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr9:95089000-95104000	Weak transcription	HSMMtube	muscle
22	chr9:95089000-95105600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr9:95089000-95110200	Weak transcription	HSMM	muscle
24	chr9:95089000-95112200	Weak transcription	Adipose Nuclei	Adipose
25	chr9:95089200-95100600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr9:95089200-95101800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr9:95089200-95103800	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr9:95089200-95110000	Weak transcription	Brain Hippocampus Middle	brain
29	chr9:95089400-95100800	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr9:95089400-95101200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr9:95089400-95101600	Weak transcription	Fetal Intestine Large	intestine
32	chr9:95089400-95103800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr9:95089400-95107000	Weak transcription	Brain Germinal Matrix	brain
34	chr9:95089400-95112000	Weak transcription	NHLF	lung
35	chr9:95089400-95113200	Weak transcription	HUVEC	blood vessel
36	chr9:95089400-95116400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr9:95089600-95101400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr9:95089600-95104400	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr9:95089600-95111200	Weak transcription	NHDF-Ad	bronchial
40	chr9:95089600-95121800	Weak transcription	Fetal Heart	heart
41	chr9:95089800-95101000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr9:95089800-95101800	Weak transcription	Fetal Brain Male	brain
43	chr9:95089800-95103600	Weak transcription	Placenta	Placenta
44	chr9:95089800-95112000	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr9:95090400-95118200	Weak transcription	HepG2	liver
46	chr9:95090800-95100600	Weak transcription	HMEC	breast
47	chr9:95090800-95100600	Weak transcription	K562	blood
48	chr9:95090800-95101200	Weak transcription	NHEK	skin
49	chr9:95091000-95120000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr9:95092200-95109800	Weak transcription	Gastric	stomach

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