Variant report

Variant	rs4743867
Chromosome Location	chr9:94987429-94987430
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:94902047..94904431-chr9:94985337..94988222,2	MCF-7	breast:
2	chr9:94986649..94988919-chr9:94991898..94993516,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000225511	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10125510	0.88[EUR][1000 genomes]
rs1058726	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1058751	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10733744	0.88[EUR][1000 genomes]
rs10761159	0.88[EUR][1000 genomes]
rs1144933	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1152760	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1152761	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1152762	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1175737	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1175923	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1175929	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1175930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1175931	0.81[EUR][1000 genomes]
rs11787696	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11788610	0.83[EUR][1000 genomes]
rs11789578	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11790257	0.91[ASN][1000 genomes]
rs11791931	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11792542	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11793505	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11794966	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12001812	0.89[AFR][1000 genomes]
rs12555097	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2084289	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2295939	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2398749	0.83[EUR][1000 genomes]
rs2761680	0.88[EUR][1000 genomes]
rs3894058	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs41280213	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41280215	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs472163	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4743862	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4743864	0.91[ASN][1000 genomes]
rs4743866	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4743868	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4743871	0.89[AFR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4744123	0.91[ASN][1000 genomes]
rs4744124	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4744125	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs501814	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs556155	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs557066	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55894730	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56110031	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs56308715	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs56374228	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6479421	0.88[EUR][1000 genomes]
rs7042199	0.88[EUR][1000 genomes]
rs72748400	0.83[EUR][1000 genomes]
rs72748402	0.83[EUR][1000 genomes]
rs7864453	0.88[EUR][1000 genomes]
rs895639	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9409464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9409465	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9409466	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9409467	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9409469	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9409470	0.81[ASN][1000 genomes]
rs9409659	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9409660	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9409661	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9409662	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9409663	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9409665	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9409666	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs944949	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv1046733	chr9:94690622-95138564	Genic enhancers Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv530947	chr9:94697309-95093377	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	nsv917089	chr9:94857047-95099848	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
6	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94973800-94990400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:94974000-94999000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr9:94982800-94988200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:94982800-94988400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr9:94982800-94988400	Strong transcription	Aorta	Aorta
6	chr9:94982800-94988400	Strong transcription	Esophagus	oesophagus
7	chr9:94982800-94988400	Strong transcription	Pancreas	Pancrea
8	chr9:94982800-94988600	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr9:94982800-94988600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr9:94982800-94988600	Strong transcription	Adipose Nuclei	Adipose
11	chr9:94982800-94988600	Strong transcription	Fetal Lung	lung
12	chr9:94982800-94988600	Strong transcription	HMEC	breast
13	chr9:94982800-94988800	Strong transcription	Primary hematopoietic stem cells	blood
14	chr9:94982800-94988800	Strong transcription	Duodenum Smooth Muscle	Duodenum
15	chr9:94982800-94988800	Strong transcription	A549	lung
16	chr9:94982800-94988800	Strong transcription	HSMM	muscle
17	chr9:94982800-94989000	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr9:94982800-94989000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
19	chr9:94982800-94989000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr9:94982800-94989000	Strong transcription	Primary T cells from cord blood	blood
21	chr9:94982800-94989000	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr9:94982800-94989000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr9:94982800-94989000	Strong transcription	Primary T helper cells PMA-I stimulated	--
24	chr9:94982800-94989000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr9:94982800-94989000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr9:94982800-94989000	Strong transcription	Muscle Satellite Cultured Cells	--
27	chr9:94982800-94989000	Strong transcription	Cortex derived primary cultured neurospheres	brain
28	chr9:94982800-94989000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr9:94982800-94989000	Strong transcription	Brain Angular Gyrus	brain
30	chr9:94982800-94989000	Strong transcription	Brain Inferior Temporal Lobe	brain
31	chr9:94982800-94989000	Strong transcription	Fetal Brain Female	brain
32	chr9:94982800-94989000	Strong transcription	Placenta	Placenta
33	chr9:94982800-94989000	Strong transcription	Gastric	stomach
34	chr9:94982800-94989000	Strong transcription	Rectal Mucosa Donor 29	rectum
35	chr9:94982800-94989000	Strong transcription	Rectal Smooth Muscle	rectum
36	chr9:94982800-94989000	Strong transcription	Sigmoid Colon	Sigmoid Colon
37	chr9:94982800-94989000	Strong transcription	Stomach Smooth Muscle	stomach
38	chr9:94982800-94989000	Strong transcription	Dnd41	blood
39	chr9:94982800-94989000	Strong transcription	Hela-S3	cervix
40	chr9:94982800-94989000	Strong transcription	HSMMtube	muscle
41	chr9:94982800-94989000	Strong transcription	HUVEC	blood vessel
42	chr9:94982800-94989000	Strong transcription	K562	blood
43	chr9:94982800-94989000	Strong transcription	NHEK	skin
44	chr9:94982800-94989000	Strong transcription	Osteobl	bone
45	chr9:94982800-94989200	Strong transcription	HUES48 Cell Line	embryonic stem cell
46	chr9:94982800-94989200	Strong transcription	HUES64 Cell Line	embryonic stem cell
47	chr9:94982800-94989200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
48	chr9:94982800-94989200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr9:94982800-94989200	Strong transcription	Primary B cells from peripheral blood	blood
50	chr9:94982800-94989200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links