Variant report

Variant	rs1152760
Chromosome Location	chr9:95127944-95127945
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95127021..95128965-chr9:95271997..95274273,2	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10125510	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1058726	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1058751	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10733744	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10761159	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1144933	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1152761	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1152762	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1175737	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1175923	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1175930	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11787696	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11789578	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11790257	0.82[ASN][1000 genomes]
rs11791931	0.82[ASN][1000 genomes]
rs11792542	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11793505	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11794966	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12555097	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2084289	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2295939	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2296665	0.87[EUR][1000 genomes]
rs230223	0.86[EUR][1000 genomes]
rs2398749	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2761680	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3894058	0.82[ASN][1000 genomes]
rs41280213	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs41280215	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs472163	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4743862	0.82[ASN][1000 genomes]
rs4743864	0.82[ASN][1000 genomes]
rs4743867	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4743868	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4743871	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4744123	0.82[ASN][1000 genomes]
rs4744124	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4744125	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs501814	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs557066	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55894730	0.90[EUR][1000 genomes]
rs56110031	0.82[ASN][1000 genomes]
rs56308715	0.82[ASN][1000 genomes]
rs56374228	0.90[EUR][1000 genomes]
rs6479421	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7042199	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7864453	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs895639	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9409464	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9409465	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9409467	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9409469	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9409470	0.81[ASN][1000 genomes]
rs9409659	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9409660	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9409661	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9409662	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9409665	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9409666	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs944949	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv1046733	chr9:94690622-95138564	Genic enhancers Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv1045165	chr9:95057462-95138564	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	nsv1047337	chr9:95105638-95347484	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv1053205	chr9:95119195-95182612	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95116800-95128600	Weak transcription	Dnd41	blood
2	chr9:95117000-95134800	Weak transcription	Ovary	ovary
3	chr9:95118000-95135000	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr9:95120000-95131400	Weak transcription	Thymus	Thymus
5	chr9:95120400-95130600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr9:95120600-95128000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr9:95120600-95128600	Weak transcription	K562	blood
8	chr9:95122200-95138600	Weak transcription	Aorta	Aorta
9	chr9:95122400-95129200	Weak transcription	Primary T cells from cord blood	blood
10	chr9:95122400-95131200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr9:95122400-95132200	Weak transcription	Fetal Intestine Small	intestine
12	chr9:95122800-95129000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr9:95122800-95130200	Weak transcription	Colon Smooth Muscle	Colon
14	chr9:95122800-95131400	Weak transcription	GM12878-XiMat	blood
15	chr9:95122800-95134800	Weak transcription	Primary hematopoietic stem cells	blood
16	chr9:95122800-95135400	Weak transcription	Fetal Thymus	thymus
17	chr9:95125600-95131200	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr9:95125600-95131400	Weak transcription	Fetal Muscle Leg	muscle
19	chr9:95127200-95130800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr9:95127400-95129400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr9:95127400-95131400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr9:95127800-95128000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast

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