Variant report

Variant	rs7042199
Chromosome Location	chr9:95143712-95143713
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95138915..95141758-chr9:95143289..95145635,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10125510	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1058726	0.88[EUR][1000 genomes]
rs1058751	0.88[EUR][1000 genomes]
rs10733744	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761159	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1144933	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1152760	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1152761	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1152762	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1175737	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1175923	0.88[EUR][1000 genomes]
rs1175929	0.82[EUR][1000 genomes]
rs1175930	0.88[EUR][1000 genomes]
rs11787696	0.91[EUR][1000 genomes]
rs11789578	0.91[EUR][1000 genomes]
rs11792542	0.88[EUR][1000 genomes]
rs11793505	0.88[EUR][1000 genomes]
rs11794966	0.84[EUR][1000 genomes]
rs12555097	0.82[EUR][1000 genomes]
rs2084289	0.88[EUR][1000 genomes]
rs2295939	0.92[EUR][1000 genomes]
rs2296665	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs230223	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2398749	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2761680	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41280213	0.91[EUR][1000 genomes]
rs41280215	0.91[EUR][1000 genomes]
rs472163	0.91[EUR][1000 genomes]
rs4743867	0.88[EUR][1000 genomes]
rs4743868	0.91[EUR][1000 genomes]
rs4743871	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4744124	0.88[EUR][1000 genomes]
rs4744125	0.88[EUR][1000 genomes]
rs501814	0.90[EUR][1000 genomes]
rs557066	0.92[EUR][1000 genomes]
rs55894730	0.91[EUR][1000 genomes]
rs56374228	0.91[EUR][1000 genomes]
rs6479421	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7864453	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs895639	0.91[EUR][1000 genomes]
rs9409464	0.91[EUR][1000 genomes]
rs9409465	0.90[EUR][1000 genomes]
rs9409467	0.91[EUR][1000 genomes]
rs9409469	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9409659	0.91[EUR][1000 genomes]
rs9409660	0.91[EUR][1000 genomes]
rs9409661	0.91[EUR][1000 genomes]
rs9409662	0.89[EUR][1000 genomes]
rs9409665	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9409666	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs944949	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1047337	chr9:95105638-95347484	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv1053205	chr9:95119195-95182612	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95128400-95146600	Weak transcription	NHEK	skin
2	chr9:95135200-95149800	Weak transcription	Primary B cells from cord blood	blood
3	chr9:95135600-95148000	Weak transcription	Ovary	ovary
4	chr9:95138000-95152400	Weak transcription	Fetal Muscle Leg	muscle
5	chr9:95139000-95163200	Weak transcription	Aorta	Aorta
6	chr9:95140400-95148000	Weak transcription	Fetal Stomach	stomach
7	chr9:95140600-95144000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr9:95140600-95145000	Weak transcription	K562	blood
9	chr9:95140600-95145600	Weak transcription	Fetal Lung	lung
10	chr9:95141600-95144600	Weak transcription	Small Intestine	intestine
11	chr9:95141600-95146200	Weak transcription	Osteobl	bone
12	chr9:95141800-95144800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr9:95141800-95146600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr9:95142000-95144200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr9:95142000-95159400	Weak transcription	Fetal Intestine Large	intestine
16	chr9:95142200-95143800	Strong transcription	Dnd41	blood
17	chr9:95142200-95145000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr9:95142200-95145800	Weak transcription	Fetal Intestine Small	intestine
19	chr9:95142200-95146200	Weak transcription	NH-A	brain
20	chr9:95142200-95165600	Weak transcription	Fetal Thymus	thymus
21	chr9:95142400-95146400	Weak transcription	HMEC	breast
22	chr9:95142600-95145000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr9:95142600-95146200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr9:95142800-95143800	Weak transcription	Primary hematopoietic stem cells	blood
25	chr9:95143000-95144200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr9:95143200-95143800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr9:95143200-95143800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr9:95143200-95146400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr9:95143400-95146400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr9:95143400-95146400	Weak transcription	Hela-S3	cervix
31	chr9:95143400-95146400	Weak transcription	NHDF-Ad	bronchial
32	chr9:95143400-95146600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr9:95143600-95144200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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