Variant report

Variant	rs1175929
Chromosome Location	chr9:94981402-94981403
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10125510	0.82[EUR][1000 genomes]
rs1058726	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1058751	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10733744	0.82[EUR][1000 genomes]
rs10761159	0.82[EUR][1000 genomes]
rs1144933	0.82[EUR][1000 genomes]
rs1152761	0.82[EUR][1000 genomes]
rs1152762	0.82[EUR][1000 genomes]
rs1175737	0.82[EUR][1000 genomes]
rs1175923	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1175930	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11787696	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11789578	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11792542	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11793505	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11794966	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12555097	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2084289	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2295939	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2761680	0.82[EUR][1000 genomes]
rs41280213	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs41280215	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs472163	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4743862	0.83[AMR][1000 genomes]
rs4743867	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4743868	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4743871	0.82[EUR][1000 genomes]
rs4744124	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4744125	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs501814	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs557066	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55894730	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56308715	0.83[AMR][1000 genomes]
rs56374228	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6479421	0.82[EUR][1000 genomes]
rs7042199	0.82[EUR][1000 genomes]
rs7864453	0.82[EUR][1000 genomes]
rs895639	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9409464	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9409465	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9409467	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9409469	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9409659	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9409660	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9409661	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9409662	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9409663	0.89[AMR][1000 genomes]
rs9409665	0.84[EUR][1000 genomes]
rs9409666	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs944949	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv1046733	chr9:94690622-95138564	Genic enhancers Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv530947	chr9:94697309-95093377	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	nsv917089	chr9:94857047-95099848	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
6	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94970800-94983400	Weak transcription	Stomach Mucosa	stomach
2	chr9:94973800-94983200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr9:94973800-94990400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr9:94974000-94982800	Weak transcription	Aorta	Aorta
5	chr9:94974000-94982800	Weak transcription	Brain Anterior Caudate	brain
6	chr9:94974000-94982800	Weak transcription	Small Intestine	intestine
7	chr9:94974000-94983200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr9:94974000-94983400	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr9:94974000-94999000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr9:94974200-94982800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr9:94974400-94982800	Weak transcription	Fetal Lung	lung
12	chr9:94974400-94983400	Weak transcription	Fetal Brain Male	brain
13	chr9:94974800-94983000	Weak transcription	Colon Smooth Muscle	Colon
14	chr9:94975000-94982800	Weak transcription	Psoas Muscle	Psoas
15	chr9:94975200-94983200	Weak transcription	Fetal Kidney	kidney
16	chr9:94975200-94983400	Weak transcription	NHDF-Ad	bronchial
17	chr9:94975400-94983000	Weak transcription	NHLF	lung
18	chr9:94975800-94982800	Weak transcription	Primary hematopoietic stem cells	blood
19	chr9:94975800-94982800	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr9:94975800-94983000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr9:94975800-94983000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr9:94976000-94982800	Weak transcription	Rectal Smooth Muscle	rectum
23	chr9:94976000-94982800	Weak transcription	GM12878-XiMat	blood
24	chr9:94976000-94982800	Weak transcription	Hela-S3	cervix
25	chr9:94976000-94982800	Weak transcription	HSMMtube	muscle
26	chr9:94976000-94982800	Weak transcription	HUVEC	blood vessel
27	chr9:94976000-94983600	Weak transcription	Fetal Heart	heart
28	chr9:94976200-94982800	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr9:94976200-94982800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr9:94976200-94982800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr9:94976200-94982800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr9:94976200-94982800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr9:94976200-94982800	Weak transcription	Fetal Intestine Large	intestine
34	chr9:94976200-94982800	Weak transcription	Pancreas	Pancrea
35	chr9:94976200-94983000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr9:94976200-94983000	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr9:94976200-94983000	Weak transcription	NH-A	brain
38	chr9:94976400-94982800	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr9:94976400-94982800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr9:94976400-94982800	Weak transcription	Esophagus	oesophagus
41	chr9:94976400-94982800	Weak transcription	Fetal Brain Female	brain
42	chr9:94976400-94982800	Weak transcription	Fetal Intestine Small	intestine
43	chr9:94976400-94982800	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr9:94976400-94982800	Weak transcription	Stomach Smooth Muscle	stomach
45	chr9:94976400-94982800	Weak transcription	Spleen	Spleen
46	chr9:94976400-94982800	Weak transcription	HepG2	liver
47	chr9:94976400-94982800	Weak transcription	NHEK	skin
48	chr9:94976400-94983200	Weak transcription	Brain Substantia Nigra	brain
49	chr9:94976400-94983600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr9:94976600-94982800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links