Variant report

Variant	rs4743862
Chromosome Location	chr9:94943897-94943898
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94939916..94941677-chr9:94943459..94945410,2	K562	blood:
2	chr9:94942048..94944825-chr9:94955253..94957515,2	MCF-7	breast:
3	chr9:94874983..94876627-chr9:94942419..94945391,2	K562	blood:
4	chr9:94939871..94945930-chr9:94946587..94952427,7	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1058726	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1058751	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1144933	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1152760	0.82[ASN][1000 genomes]
rs1152761	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1152762	0.82[ASN][1000 genomes]
rs1175737	1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1175923	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1175929	0.83[AMR][1000 genomes]
rs1175930	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1175931	0.88[CEU][hapmap]
rs11787696	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11789578	0.81[CHB][hapmap];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11790257	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11791931	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11792542	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11793505	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11794966	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12555097	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2084289	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2295939	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes]
rs3894058	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41280213	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs41280215	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs472163	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4743863	0.81[ASN][1000 genomes]
rs4743864	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743866	0.87[CEU][hapmap]
rs4743867	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4743868	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4743871	0.92[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4744123	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744124	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4744125	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs501814	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs556155	0.87[CEU][hapmap]
rs557066	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs55894730	0.85[AMR][1000 genomes]
rs56110031	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56308715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56374228	0.85[AMR][1000 genomes]
rs895639	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9409464	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9409465	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9409466	0.88[CEU][hapmap]
rs9409467	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9409469	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs9409659	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9409660	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9409661	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9409662	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9409665	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs9409666	0.86[ASN][1000 genomes]
rs944949	0.93[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv1046733	chr9:94690622-95138564	Genic enhancers Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv530947	chr9:94697309-95093377	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	nsv917089	chr9:94857047-95099848	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
6	nsv969760	chr9:94877924-94966209	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv893572	chr9:94891778-94944778	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94941400-94944000	Enhancers	Fetal Muscle Leg	muscle
2	chr9:94941400-94944000	Enhancers	K562	blood
3	chr9:94941400-94944200	Enhancers	HSMMtube	muscle
4	chr9:94941600-94944000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr9:94942400-94944000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:94942400-94944000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr9:94942600-94944000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr9:94942600-94944000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
9	chr9:94942600-94944000	Enhancers	Placenta	Placenta
10	chr9:94942600-94944000	Enhancers	GM12878-XiMat	blood
11	chr9:94942600-94944000	Enhancers	HSMM	muscle
12	chr9:94942600-94944200	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr9:94942800-94944000	Enhancers	Muscle Satellite Cultured Cells	--
14	chr9:94942800-94944000	Enhancers	Fetal Stomach	stomach
15	chr9:94942800-94944000	Enhancers	NHLF	lung
16	chr9:94942800-94944200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr9:94943000-94944000	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr9:94943000-94944200	Enhancers	Placenta Amnion	Placenta Amnion
19	chr9:94943400-94944000	Enhancers	Primary hematopoietic stem cells	blood
20	chr9:94943800-94944200	ZNF genes & repeats	Gastric	stomach
21	chr9:94943800-94944400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr9:94943800-94947600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr9:94943800-94949000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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