Variant report

Variant	rs9409608
Chromosome Location	chr9:94337358-94337359
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10114204	0.89[ASN][1000 genomes]
rs10116888	0.87[ASN][1000 genomes]
rs12336409	0.87[ASN][1000 genomes]
rs12338549	0.98[ASN][1000 genomes]
rs12341194	0.89[ASN][1000 genomes]
rs4743841	0.89[ASN][1000 genomes]
rs4744058	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744061	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4744070	0.89[ASN][1000 genomes]
rs61667734	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6479365	0.89[ASN][1000 genomes]
rs7850575	0.89[ASN][1000 genomes]
rs9409429	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9409430	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9409606	0.86[EUR][1000 genomes]
rs9409607	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9409609	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9409610	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94333600-94339600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:94335000-94339600	Weak transcription	Brain Germinal Matrix	brain
3	chr9:94335400-94339200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr9:94335400-94339600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr9:94335400-94339600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr9:94335600-94338800	Weak transcription	Colon Smooth Muscle	Colon
7	chr9:94335600-94347000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr9:94335800-94339400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr9:94335800-94339800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr9:94335800-94339800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr9:94335800-94340000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr9:94335800-94344800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr9:94336000-94338400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr9:94336200-94338000	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr9:94336200-94338400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr9:94336200-94339800	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr9:94336400-94340000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr9:94337000-94339600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links