Variant report

Variant	rs9409606
Chromosome Location	chr9:94335290-94335291
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:94332491..94335294-chr9:94337206..94339480,2	K562	blood:
2	chr9:94333406..94335605-chr9:94340946..94342619,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1021439	0.83[CHD][hapmap];0.81[GIH][hapmap]
rs10992025	0.83[CHD][hapmap];0.81[GIH][hapmap]
rs12340405	0.81[GIH][hapmap]
rs12340837	0.83[CHD][hapmap];0.81[GIH][hapmap]
rs1492682	0.83[CHD][hapmap]
rs4744061	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61667734	0.83[EUR][1000 genomes]
rs6479368	0.83[CHD][hapmap]
rs7847068	0.83[CHD][hapmap];0.81[GIH][hapmap]
rs902923	0.81[CEU][hapmap]
rs9409427	0.80[CEU][hapmap]
rs9409429	0.93[CEU][hapmap];0.90[EUR][1000 genomes]
rs9409430	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs9409608	0.86[EUR][1000 genomes]
rs9409609	0.93[CEU][hapmap];0.96[GIH][hapmap];0.96[TSI][hapmap];0.83[EUR][1000 genomes]
rs9409610	0.93[CEU][hapmap];0.83[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9409606	BICD2	cis	parietal	SCAN
rs9409606	LOC440173	cis	parietal	SCAN

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94333600-94339600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:94333800-94335400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr9:94333800-94335400	Enhancers	Stomach Mucosa	stomach
4	chr9:94333800-94335600	Enhancers	Fetal Stomach	stomach
5	chr9:94334000-94335400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr9:94334200-94335600	Enhancers	Colon Smooth Muscle	Colon
7	chr9:94334200-94335600	Enhancers	Fetal Heart	heart
8	chr9:94334200-94336000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:94334400-94335400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr9:94334400-94335600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr9:94334400-94335800	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr9:94334400-94336400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr9:94334600-94335800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr9:94334800-94335400	Enhancers	Stomach Smooth Muscle	stomach
15	chr9:94335000-94335400	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr9:94335000-94335600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr9:94335000-94335600	Enhancers	Esophagus	oesophagus
18	chr9:94335000-94336200	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr9:94335000-94339600	Weak transcription	Brain Germinal Matrix	brain
20	chr9:94335200-94335400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr9:94335200-94335600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr9:94335200-94335800	Enhancers	H9 Cell Line	embryonic stem cell
23	chr9:94335200-94335800	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr9:94335200-94336200	Enhancers	H1 Cell Line	embryonic stem cell

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