Variant report

Variant	rs9446263
Chromosome Location	chr6:71255754-71255755
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:71228771..71231572-chr6:71254791..71257438,2	K562	blood:
2	chr6:71255696..71258103-chr6:71275754..71278045,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000154079	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10080714	0.82[AFR][1000 genomes]
rs10440813	0.93[AFR][1000 genomes]
rs10485117	0.88[AFR][1000 genomes]
rs12332812	0.82[AFR][1000 genomes]
rs12332923	0.91[AFR][1000 genomes]
rs16869217	0.93[AFR][1000 genomes]
rs16869242	0.93[AFR][1000 genomes]
rs16869261	0.93[AFR][1000 genomes]
rs16869301	0.91[AFR][1000 genomes]
rs2207424	0.86[AFR][1000 genomes]
rs2223997	0.93[AFR][1000 genomes]
rs28555262	0.98[AFR][1000 genomes]
rs28885692	0.98[AFR][1000 genomes]
rs3846749	0.88[AFR][1000 genomes]
rs747454	0.82[AFR][1000 genomes]
rs9294869	0.82[AFR][1000 genomes]
rs9294870	0.88[AFR][1000 genomes]
rs9294873	0.86[AFR][1000 genomes]
rs9294875	0.83[AFR][1000 genomes]
rs9446243	0.88[AFR][1000 genomes]
rs9446247	0.82[AFR][1000 genomes]
rs9446251	0.86[AFR][1000 genomes]
rs9446253	0.91[AFR][1000 genomes]
rs9446255	0.86[AFR][1000 genomes]
rs9446256	0.93[AFR][1000 genomes]
rs9446257	0.93[AFR][1000 genomes]
rs9446259	0.91[AFR][1000 genomes]
rs9446260	0.98[AFR][1000 genomes]
rs9446261	0.98[AFR][1000 genomes]
rs9446262	0.98[AFR][1000 genomes]
rs9446264	0.91[AFR][1000 genomes]
rs9446265	0.98[AFR][1000 genomes]
rs9446266	0.93[AFR][1000 genomes]
rs9455102	0.88[AFR][1000 genomes]
rs9455103	0.81[AFR][1000 genomes]
rs9455107	0.86[AFR][1000 genomes]
rs9455109	0.86[AFR][1000 genomes]
rs9455110	0.86[AFR][1000 genomes]
rs9455112	0.86[AFR][1000 genomes]
rs9455115	0.86[AFR][1000 genomes]
rs9455116	0.86[AFR][1000 genomes]
rs9455117	0.82[AFR][1000 genomes]
rs9455118	0.93[AFR][1000 genomes]
rs9455119	0.86[AFR][1000 genomes]
rs9455120	0.93[AFR][1000 genomes]
rs9455122	0.93[AFR][1000 genomes]
rs9455123	0.93[AFR][1000 genomes]
rs9455124	0.86[AFR][1000 genomes]
rs9455126	0.86[AFR][1000 genomes]
rs9455127	0.86[AFR][1000 genomes]
rs9455128	0.86[AFR][1000 genomes]
rs9455131	0.93[AFR][1000 genomes]
rs9455134	0.91[AFR][1000 genomes]
rs9455135	0.98[AFR][1000 genomes]
rs9455136	0.98[AFR][1000 genomes]
rs9455137	0.98[AFR][1000 genomes]
rs9455141	0.91[AFR][1000 genomes]
rs9455142	0.91[AFR][1000 genomes]
rs9455143	0.91[AFR][1000 genomes]
rs9455145	0.91[AFR][1000 genomes]
rs9455146	0.91[AFR][1000 genomes]
rs9455147	0.98[AFR][1000 genomes]
rs9455148	0.98[AFR][1000 genomes]
rs9455152	0.91[AFR][1000 genomes]
rs9455154	0.91[AFR][1000 genomes]
rs9455155	0.91[AFR][1000 genomes]
rs9455157	0.98[AFR][1000 genomes]
rs9455159	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1027049	chr6:70961610-71561488	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv524328	chr6:70961833-71558805	Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv917312	chr6:70961903-71601688	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv886145	chr6:71119524-71317480	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv886146	chr6:71219464-71317480	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71210600-71262000	Weak transcription	Fetal Thymus	thymus
2	chr6:71214000-71256600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:71214000-71276000	Weak transcription	Brain Angular Gyrus	brain
4	chr6:71214000-71276000	Weak transcription	Brain Germinal Matrix	brain
5	chr6:71214000-71276000	Weak transcription	Colon Smooth Muscle	Colon
6	chr6:71214400-71257000	Weak transcription	Brain Anterior Caudate	brain
7	chr6:71214400-71262000	Weak transcription	Psoas Muscle	Psoas
8	chr6:71214600-71276000	Weak transcription	A549	lung
9	chr6:71215000-71273000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:71216200-71262200	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr6:71219000-71258800	Weak transcription	Small Intestine	intestine
12	chr6:71228600-71276000	Weak transcription	Primary T cells from cord blood	blood
13	chr6:71229600-71276200	Weak transcription	Aorta	Aorta
14	chr6:71231200-71268000	Weak transcription	Brain Cingulate Gyrus	brain
15	chr6:71231800-71257200	Weak transcription	Fetal Heart	heart
16	chr6:71233400-71256800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:71234800-71256600	Weak transcription	HepG2	liver
18	chr6:71235600-71258200	Weak transcription	Liver	Liver
19	chr6:71236400-71273200	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr6:71237000-71276200	Weak transcription	Left Ventricle	heart
21	chr6:71237600-71257400	Weak transcription	Osteobl	bone
22	chr6:71240800-71256400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr6:71241600-71257400	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr6:71242800-71257400	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr6:71243400-71276200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr6:71243600-71259800	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr6:71245400-71257200	Weak transcription	Rectal Smooth Muscle	rectum
28	chr6:71245400-71258800	Weak transcription	Lung	lung
29	chr6:71245400-71261400	Weak transcription	Fetal Muscle Trunk	muscle
30	chr6:71245400-71270600	Weak transcription	Adipose Nuclei	Adipose
31	chr6:71245400-71276400	Weak transcription	Esophagus	oesophagus
32	chr6:71245400-71276400	Weak transcription	Gastric	stomach
33	chr6:71245600-71256000	Weak transcription	Primary B cells from peripheral blood	blood
34	chr6:71245600-71276200	Weak transcription	Primary B cells from cord blood	blood
35	chr6:71247600-71257400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr6:71249000-71257400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr6:71249200-71256000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr6:71249200-71258400	Weak transcription	NHEK	skin
39	chr6:71249200-71268200	Weak transcription	Fetal Lung	lung
40	chr6:71249200-71273000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr6:71249200-71275800	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr6:71249400-71256000	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr6:71249400-71266800	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr6:71249400-71276200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr6:71249800-71276200	Weak transcription	Fetal Brain Female	brain
46	chr6:71250000-71256200	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr6:71250000-71256400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr6:71250000-71256600	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr6:71250000-71273400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr6:71250000-71274600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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