Variant report

Variant	rs9455126
Chromosome Location	chr6:71186139-71186140
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:71169685..71171410-chr6:71183568..71186489,2	K562	blood:

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10080714	0.95[AFR][1000 genomes]
rs10440813	0.91[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10485117	0.86[ASW][hapmap];1.00[LWK][hapmap];0.92[MKK][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes]
rs12332812	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs12332923	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16869217	0.91[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16869242	0.91[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16869261	0.91[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16869301	1.00[ASW][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2207424	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2223997	0.91[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28555262	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28885692	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3846749	0.91[YRI][hapmap];0.88[AFR][1000 genomes]
rs747454	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs9294867	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs9294869	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs9294870	0.91[YRI][hapmap];0.88[AFR][1000 genomes]
rs9294873	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9294875	1.00[AMR][1000 genomes]
rs9294877	0.82[AFR][1000 genomes]
rs9446243	0.91[YRI][hapmap];0.88[AFR][1000 genomes]
rs9446244	0.89[YRI][hapmap];0.85[AFR][1000 genomes]
rs9446247	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs9446249	0.83[AFR][1000 genomes]
rs9446251	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9446253	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9446255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9446256	0.91[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9446257	0.91[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9446259	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9446260	0.91[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9446261	0.91[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9446262	0.91[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9446263	0.86[AFR][1000 genomes]
rs9446264	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9446265	0.91[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9446266	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9446277	0.92[LWK][hapmap]
rs9455091	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs9455096	0.91[YRI][hapmap]
rs9455102	0.91[YRI][hapmap];0.88[AFR][1000 genomes]
rs9455103	0.91[YRI][hapmap];0.80[AFR][1000 genomes]
rs9455107	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455109	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455115	0.89[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455117	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455118	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455119	0.88[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455120	0.86[ASW][hapmap];1.00[LWK][hapmap];0.92[MKK][hapmap];0.91[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455122	0.91[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455123	0.91[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455124	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455127	0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455128	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455131	0.86[ASW][hapmap];1.00[LWK][hapmap];0.85[MKK][hapmap];0.91[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455134	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455135	0.91[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455136	0.91[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455137	0.91[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455141	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455142	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455143	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455145	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455146	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455147	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455148	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455152	1.00[ASW][hapmap];1.00[LWK][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs9455154	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455155	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455157	0.91[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455159	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455175	0.80[AFR][1000 genomes]
rs9455183	0.82[AFR][1000 genomes]
rs9455184	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv886142	chr6:70741209-71251421	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1027049	chr6:70961610-71561488	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv524328	chr6:70961833-71558805	Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv917312	chr6:70961903-71601688	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv886144	chr6:71018467-71214201	Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv886145	chr6:71119524-71317480	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71124400-71192800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr6:71125400-71188800	Weak transcription	Colon Smooth Muscle	Colon
3	chr6:71125400-71188800	Weak transcription	HSMM	muscle
4	chr6:71134000-71213400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:71136800-71213600	Weak transcription	Brain Substantia Nigra	brain
6	chr6:71141400-71186800	Weak transcription	Fetal Brain Female	brain
7	chr6:71154600-71188800	Weak transcription	Fetal Heart	heart
8	chr6:71158200-71212400	Weak transcription	Fetal Brain Male	brain
9	chr6:71158400-71186800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr6:71158400-71198000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr6:71158400-71213600	Weak transcription	NHEK	skin
12	chr6:71158800-71212600	Weak transcription	Colonic Mucosa	Colon
13	chr6:71168200-71189200	Weak transcription	Psoas Muscle	Psoas
14	chr6:71171000-71186800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr6:71172600-71186800	Weak transcription	Primary T cells from cord blood	blood
16	chr6:71173800-71187000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr6:71175000-71197400	Weak transcription	Fetal Thymus	thymus
18	chr6:71175400-71186800	Weak transcription	Small Intestine	intestine
19	chr6:71175800-71193400	Weak transcription	Thymus	Thymus
20	chr6:71177200-71186800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr6:71177800-71196200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:71178000-71210400	Weak transcription	Lung	lung
23	chr6:71179600-71191000	Weak transcription	Gastric	stomach
24	chr6:71179800-71186800	Weak transcription	Spleen	Spleen
25	chr6:71179800-71189000	Weak transcription	Stomach Mucosa	stomach
26	chr6:71180400-71212600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr6:71180800-71187600	Strong transcription	Fetal Intestine Large	intestine
28	chr6:71180800-71200000	Weak transcription	Brain Anterior Caudate	brain
29	chr6:71181000-71188200	Strong transcription	Rectal Mucosa Donor 31	rectum
30	chr6:71181600-71213600	Weak transcription	HMEC	breast
31	chr6:71181600-71215800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr6:71181800-71187200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr6:71182000-71192600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr6:71182000-71196600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr6:71182200-71187400	Strong transcription	Sigmoid Colon	Sigmoid Colon
36	chr6:71182200-71189200	Weak transcription	HSMMtube	muscle
37	chr6:71182400-71187400	Strong transcription	Duodenum Mucosa	Duodenum
38	chr6:71182400-71188000	Strong transcription	Rectal Mucosa Donor 29	rectum
39	chr6:71182600-71186800	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr6:71182800-71188000	Strong transcription	Adipose Nuclei	Adipose
41	chr6:71183000-71187400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr6:71183000-71187800	Strong transcription	Primary hematopoietic stem cells	blood
43	chr6:71183000-71188000	Strong transcription	Primary monocytes fromperipheralblood	blood
44	chr6:71183000-71188600	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr6:71183200-71187000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr6:71183200-71187400	Strong transcription	Primary B cells from cord blood	blood
47	chr6:71183200-71187400	Strong transcription	Brain Angular Gyrus	brain
48	chr6:71183200-71188200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr6:71183400-71187200	Strong transcription	Liver	Liver
50	chr6:71183400-71187400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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