Variant report

Variant	rs9455134
Chromosome Location	chr6:71214913-71214914
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:71213755..71215482-chr6:71215543..71217177,2	MCF-7	breast:

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10080714	0.86[AFR][1000 genomes]
rs10440813	0.93[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10485117	0.91[YRI][hapmap];0.93[AFR][1000 genomes]
rs12332812	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs12332923	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16869217	0.93[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16869242	0.92[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16869261	0.93[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16869301	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2207424	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2223997	0.93[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28555262	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28885692	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3846749	0.93[YRI][hapmap];0.93[AFR][1000 genomes]
rs747454	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs9294867	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs9294869	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs9294870	0.93[YRI][hapmap];0.93[AFR][1000 genomes]
rs9294873	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9294875	1.00[AMR][1000 genomes]
rs9446243	0.93[YRI][hapmap];0.93[AFR][1000 genomes]
rs9446244	0.91[YRI][hapmap]
rs9446247	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs9446251	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9446253	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9446255	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9446256	0.92[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9446257	0.93[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9446259	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9446260	0.93[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9446261	0.93[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9446262	0.92[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9446263	0.91[AFR][1000 genomes]
rs9446264	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9446265	0.93[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9446266	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455091	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs9455096	0.93[YRI][hapmap]
rs9455102	0.92[YRI][hapmap];0.93[AFR][1000 genomes]
rs9455103	0.93[YRI][hapmap];0.85[AFR][1000 genomes]
rs9455107	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455109	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455110	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455112	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455115	0.90[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455116	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455117	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455118	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455119	0.90[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455120	0.91[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455122	0.93[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455123	0.93[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455124	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455126	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455127	0.92[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455128	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455131	0.91[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455135	0.93[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455136	0.93[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455137	0.93[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455141	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455142	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455143	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455145	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455146	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455147	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455148	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455152	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs9455154	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455155	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455157	0.93[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455159	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv886142	chr6:70741209-71251421	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1027049	chr6:70961610-71561488	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv524328	chr6:70961833-71558805	Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv917312	chr6:70961903-71601688	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv886145	chr6:71119524-71317480	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71181600-71215800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:71183800-71216200	Weak transcription	Pancreas	Pancrea
3	chr6:71187400-71218200	Weak transcription	Small Intestine	intestine
4	chr6:71191200-71216000	Weak transcription	Gastric	stomach
5	chr6:71207600-71215200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:71208800-71215600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:71209800-71216800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr6:71210600-71215200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr6:71210600-71216000	Strong transcription	Placenta	Placenta
10	chr6:71210600-71262000	Weak transcription	Fetal Thymus	thymus
11	chr6:71210800-71215800	Weak transcription	Thymus	Thymus
12	chr6:71210800-71216200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:71211400-71221600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:71211600-71216400	Weak transcription	Fetal Stomach	stomach
15	chr6:71211800-71215200	Weak transcription	NH-A	brain
16	chr6:71212000-71215200	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr6:71212000-71217600	Weak transcription	Hela-S3	cervix
18	chr6:71212200-71215400	Strong transcription	Primary hematopoietic stem cells	blood
19	chr6:71212600-71216200	Strong transcription	Skeletal Muscle Female	skeletal muscle
20	chr6:71213200-71216800	Weak transcription	Stomach Mucosa	stomach
21	chr6:71214000-71215000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:71214000-71215200	Strong transcription	Adipose Nuclei	Adipose
23	chr6:71214000-71215600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr6:71214000-71216000	Weak transcription	Primary T cells from cord blood	blood
25	chr6:71214000-71216000	Strong transcription	Rectal Mucosa Donor 31	rectum
26	chr6:71214000-71216200	Strong transcription	Duodenum Mucosa	Duodenum
27	chr6:71214000-71217000	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr6:71214000-71217800	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr6:71214000-71217800	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr6:71214000-71218200	Weak transcription	NHDF-Ad	bronchial
31	chr6:71214000-71218400	Weak transcription	Fetal Heart	heart
32	chr6:71214000-71220600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr6:71214000-71236600	Weak transcription	Primary B cells from cord blood	blood
34	chr6:71214000-71244800	Weak transcription	Fetal Muscle Trunk	muscle
35	chr6:71214000-71248600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr6:71214000-71248800	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr6:71214000-71249600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr6:71214000-71250600	Weak transcription	Right Ventricle	heart
39	chr6:71214000-71253000	Weak transcription	Colonic Mucosa	Colon
40	chr6:71214000-71253000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr6:71214000-71256600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr6:71214000-71276000	Weak transcription	Brain Angular Gyrus	brain
43	chr6:71214000-71276000	Weak transcription	Brain Germinal Matrix	brain
44	chr6:71214000-71276000	Weak transcription	Colon Smooth Muscle	Colon
45	chr6:71214200-71215200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
46	chr6:71214200-71216200	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr6:71214200-71217000	Strong transcription	HUES64 Cell Line	embryonic stem cell
48	chr6:71214200-71217400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr6:71214200-71218000	Weak transcription	HUVEC	blood vessel
50	chr6:71214200-71225800	Weak transcription	Ovary	ovary

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