Variant report

Variant	rs9446696
Chromosome Location	chr6:73235862-73235863
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10214605	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10485211	1.00[ASN][1000 genomes]
rs9442801	1.00[AMR][1000 genomes]
rs9442802	1.00[AMR][1000 genomes]
rs9446671	1.00[ASN][1000 genomes]
rs9446693	1.00[YRI][hapmap]
rs9446695	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9446697	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73232800-73243000	Weak transcription	K562	blood
2	chr6:73234200-73239600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:73234200-73240000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:73234400-73239600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:73234400-73239600	Weak transcription	NHEK	skin
6	chr6:73235000-73236000	Enhancers	HSMMtube	muscle
7	chr6:73235000-73236200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:73235200-73236600	Enhancers	HSMM	muscle
9	chr6:73235600-73236200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:73235600-73236200	Enhancers	Fetal Stomach	stomach
11	chr6:73235600-73236200	Enhancers	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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