Variant report

Variant	rs9446695
Chromosome Location	chr6:73232658-73232659
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10214605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10485211	1.00[ASN][1000 genomes]
rs16882707	1.00[TSI][hapmap]
rs9442801	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9442802	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446671	1.00[ASN][1000 genomes]
rs9446692	1.00[CHD][hapmap]
rs9446693	1.00[CHD][hapmap]
rs9446694	0.90[ASW][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs9446696	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9446697	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73232400-73232800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:73232400-73232800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:73232400-73232800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:73232400-73232800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:73232400-73232800	Enhancers	K562	blood
6	chr6:73232400-73233000	Enhancers	Pancreas	Pancrea
7	chr6:73232400-73234200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:73232400-73234400	Enhancers	NHEK	skin
9	chr6:73232600-73232800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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